{ "type": "genome", "identifier": "GCF_000144605.1", "organism": "Brevundimonas subvibrioides ATCC 15264", "title": "Brevundimonas subvibrioides ATCC 15264", "description": "na", "data type": "Genome sequencing and assembly", "organization": "US DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000144605.1", "bioproject": "PRJNA224116", "biosample": "SAMN00007485", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "633149", "species_taxid": "74313", "organism_name": "Brevundimonas subvibrioides ATCC 15264", "infraspecific_name": "strain=ATCC 15264", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2010/08/05", "asm_name": "ASM14460v1", "asm_submitter": "US DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000144605.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/144/605/GCF_000144605.1_ASM14460v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3445263", "genome_size_ungapped": "3445263", "gc_percent": "68.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000144605.1-RS_2024_05_01", "annotation_date": "2024-05-01", "total_gene_count": "3385", "protein_coding_gene_count": "3325", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2010-08-05", "dateModified": "2010-08-05", "datePublished": "2010-08-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Brevundimonas subvibrioides ATCC 15264" ], "sample_taxid": [ "633149" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [ "None" ], "sample_host_disease_id": [], "sample_host_location": [ "Missing" ], "sample_host_location_id": [], "data_size": "0.935 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3445263", "Number of Sequences": "1", "Longest Sequences (bp)": "3445263", "N50 (bp)": "3445263", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "68.4", "Number of CDSs": "3362", "Average Protein Length": "312.4", "Coding Ratio (%)": "91.5", "Number of rRNAs": "6", "Number of tRNAs": "59", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Brevundimonas subvibrioides", "strain": "strain=ATCC 15264", "accession": "GCA_000144605.1", "taxid": 74313, "species_taxid": 74313, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1146, "total_fragments": 1148, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Brevundimonas bacteroides", "strain": "strain=DSM 4726", "accession": "GCA_000701445.1", "taxid": 74311, "species_taxid": 74311, "relation_to_type": "type", "validated": true, "ani": 82.6315, "matched_fragments": 709, "total_fragments": 1148, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas goettingensis", "strain": "strain=LVF2", "accession": "GCA_017487405.1", "taxid": 2774190, "species_taxid": 2774190, "relation_to_type": "type", "validated": true, "ani": 82.3324, "matched_fragments": 730, "total_fragments": 1148, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas albigilva", "strain": "strain=KEME 9005-016", "accession": "GCA_023503965.1", "taxid": 1312364, "species_taxid": 1312364, "relation_to_type": "type", "validated": true, "ani": 81.8704, "matched_fragments": 620, "total_fragments": 1148, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas mediterranea", "strain": "strain=DSM 14878", "accession": "GCA_014196125.1", "taxid": 74329, "species_taxid": 74329, "relation_to_type": "type", "validated": true, "ani": 81.7127, "matched_fragments": 602, "total_fragments": 1148, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas bullata", "strain": "strain=HAMBI_262", "accession": "GCA_003350205.1", "taxid": 13160, "species_taxid": 13160, "relation_to_type": "type", "validated": true, "ani": 81.4255, "matched_fragments": 598, "total_fragments": 1148, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas pondensis", "strain": "strain=LVF1", "accession": "GCA_017487345.1", "taxid": 2774189, "species_taxid": 2774189, "relation_to_type": "type", "validated": true, "ani": 81.3491, "matched_fragments": 612, "total_fragments": 1148, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas basaltis", "strain": "strain=DSM 25335", "accession": "GCA_014202075.1", "taxid": 472166, "species_taxid": 472166, "relation_to_type": "type", "validated": true, "ani": 81.2976, "matched_fragments": 579, "total_fragments": 1148, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas huaxiensis", "strain": "strain=090558", "accession": "GCA_014218725.1", "taxid": 2725493, "species_taxid": 2725493, "relation_to_type": "type", "validated": true, "ani": 81.2052, "matched_fragments": 605, "total_fragments": 1148, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas variabilis", "strain": "strain=DSM 4737", "accession": "GCA_014199945.1", "taxid": 74312, "species_taxid": 74312, "relation_to_type": "type", "validated": true, "ani": 81.1585, "matched_fragments": 615, "total_fragments": 1148, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas guildfordensis", "strain": "strain=Sa3CVA3", "accession": "GCA_014836405.1", "taxid": 2762241, "species_taxid": 2762241, "relation_to_type": "type", "validated": true, "ani": 81.1215, "matched_fragments": 541, "total_fragments": 1148, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas vitisensis", "strain": "strain=GR-TSA-9", "accession": "GCA_016656965.1", "taxid": 2800818, "species_taxid": 2800818, "relation_to_type": "type", "validated": true, "ani": 81.0678, "matched_fragments": 582, "total_fragments": 1148, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas pishanensis", "strain": "strain=CHPC 1.3453", "accession": "GCA_022750635.1", "taxid": 2896315, "species_taxid": 2896315, "relation_to_type": "type", "validated": true, "ani": 78.4944, "matched_fragments": 326, "total_fragments": 1148, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phenylobacterium aquaticum", "strain": "strain=KACC 18306", "accession": "GCA_022695515.1", "taxid": 1763816, "species_taxid": 1763816, "relation_to_type": "type", "validated": true, "ani": 78.3229, "matched_fragments": 371, "total_fragments": 1148, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000144605.1", "gtdb_species": "s__Brevundimonas subvibrioides", "ani": 100.0, "matched_fragments": 1146, "total_fragments": 1148, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Brevundimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_017795885.1", "gtdb_species": "s__Brevundimonas sp017795885", "ani": 87.5128, "matched_fragments": 810, "total_fragments": 1148, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Brevundimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002002865.1", "gtdb_species": "s__Brevundimonas sp002002865", "ani": 86.5766, "matched_fragments": 803, "total_fragments": 1148, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Brevundimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002280785.1", "gtdb_species": "s__Brevundimonas subvibrioides_B", "ani": 84.3599, "matched_fragments": 726, "total_fragments": 1148, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Brevundimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018820205.1", "gtdb_species": "s__Brevundimonas sp018820205", "ani": 83.5813, "matched_fragments": 653, "total_fragments": 1148, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Brevundimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.87", "min_intra_species_ani": "99.87", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.87", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_002280475.1", "gtdb_species": "s__Brevundimonas subvibrioides_C", "ani": 83.3171, "matched_fragments": 732, "total_fragments": 1148, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Brevundimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.76", "min_intra_species_ani": "99.76", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000701445.1", "gtdb_species": "s__Brevundimonas bacteroides", "ani": 82.6337, "matched_fragments": 709, "total_fragments": 1148, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Brevundimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001295975.1", "gtdb_species": "s__Brevundimonas sp001295975", "ani": 82.589, "matched_fragments": 651, "total_fragments": 1148, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Brevundimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017487405.1", "gtdb_species": "s__Brevundimonas sp017487405", "ani": 82.3509, "matched_fragments": 727, "total_fragments": 1148, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Brevundimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002292165.1", "gtdb_species": "s__Brevundimonas sp002292165", "ani": 81.6464, "matched_fragments": 626, "total_fragments": 1148, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Brevundimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014199945.1", "gtdb_species": "s__Brevundimonas variabilis", "ani": 81.1505, "matched_fragments": 620, "total_fragments": 1148, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Brevundimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.348, "cell_length": 0.266, "doubling_h": null, "growth_tmp": 30.0, "optimum_tmp": 28.178, "optimum_ph": 7.0, "genome_size": 3445262.4, "gc_content": 68.4, "coding_genes": 3281.0, "rRNA16S_genes": 2.0, "tRNA_genes": 46.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Brevundimonas", "subvibrioides", "ATCC", "15264" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }