{ "type": "genome", "identifier": "GCF_000145235.1", "organism": "Micromonospora aurantiaca ATCC 27029", "title": "Micromonospora aurantiaca ATCC 27029", "description": "na", "data type": "Genome sequencing and assembly", "organization": "US DOE Joint Genome Institute (JGI-PGF)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000145235.1", "bioproject": "PRJNA224116", "biosample": "SAMN00006196", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "644283", "species_taxid": "47850", "organism_name": "Micromonospora aurantiaca ATCC 27029", "infraspecific_name": "strain=ATCC 27029", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2010/08/11", "asm_name": "ASM14523v1", "asm_submitter": "US DOE Joint Genome Institute (JGI-PGF)", "gbrs_paired_asm": "GCA_000145235.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/145/235/GCF_000145235.1_ASM14523v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7025559", "genome_size_ungapped": "7025559", "gc_percent": "73.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000145235.1-RS_2024_04_26", "annotation_date": "2024-04-26", "total_gene_count": "6377", "protein_coding_gene_count": "6242", "non_coding_gene_count": "64", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2010-08-11", "dateModified": "2010-08-11", "datePublished": "2010-08-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Micromonospora aurantiaca ATCC 27029" ], "sample_taxid": [ "644283" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [ "None" ], "sample_host_disease_id": [], "sample_host_location": [ "Missing" ], "sample_host_location_id": [], "data_size": "1.845 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7025559", "Number of Sequences": "1", "Longest Sequences (bp)": "7025559", "N50 (bp)": "7025559", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "72.8", "Number of CDSs": "6432", "Average Protein Length": "331.3", "Coding Ratio (%)": "91.0", "Number of rRNAs": "9", "Number of tRNAs": "76", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Micromonospora aurantiaca", "strain": "strain=ATCC 27029", "accession": "GCA_000145235.1", "taxid": 47850, "species_taxid": 47850, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2341, "total_fragments": 2341, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Micromonospora aurantiaca", "strain": "strain=ATCC 27029", "accession": "GCA_003721415.1", "taxid": 47850, "species_taxid": 47850, "relation_to_type": "type", "validated": true, "ani": 98.6309, "matched_fragments": 2108, "total_fragments": 2341, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Micromonospora tulbaghiae", "strain": "strain=DSM 45142", "accession": "GCA_900091605.1", "taxid": 479978, "species_taxid": 479978, "relation_to_type": "type", "validated": true, "ani": 95.1723, "matched_fragments": 1875, "total_fragments": 2341, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Micromonospora marina", "strain": "strain=DSM 45555", "accession": "GCA_900091565.1", "taxid": 307120, "species_taxid": 307120, "relation_to_type": "type", "validated": true, "ani": 94.3754, "matched_fragments": 1702, "total_fragments": 2341, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora chalcea", "strain": "strain=DSM 43026", "accession": "GCA_002926165.1", "taxid": 1874, "species_taxid": 1874, "relation_to_type": "type", "validated": true, "ani": 93.7578, "matched_fragments": 1826, "total_fragments": 2341, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora sediminicola", "strain": "strain=DSM 45794", "accession": "GCA_900089585.1", "taxid": 946078, "species_taxid": 946078, "relation_to_type": "type", "validated": true, "ani": 89.8995, "matched_fragments": 1726, "total_fragments": 2341, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora maritima", "strain": "", "accession": "GCA_902825405.1", "taxid": 986711, "species_taxid": 986711, "relation_to_type": "type", "validated": true, "ani": 89.8264, "matched_fragments": 1234, "total_fragments": 2341, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora ferruginea", "strain": "strain=28ISP2-46", "accession": "GCA_013694245.1", "taxid": 2749844, "species_taxid": 2749844, "relation_to_type": "type", "validated": true, "ani": 89.4557, "matched_fragments": 1701, "total_fragments": 2341, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora viridifaciens", "strain": "strain=DSM 43909", "accession": "GCA_900091545.1", "taxid": 1881, "species_taxid": 1881, "relation_to_type": "type", "validated": true, "ani": 86.0451, "matched_fragments": 1409, "total_fragments": 2341, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora eburnea", "strain": "strain=DSM 44814", "accession": "GCA_900090225.1", "taxid": 227316, "species_taxid": 227316, "relation_to_type": "type", "validated": true, "ani": 85.839, "matched_fragments": 1468, "total_fragments": 2341, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora mirobrigensis", "strain": "strain=DSM 44830", "accession": "GCA_900091555.1", "taxid": 262898, "species_taxid": 262898, "relation_to_type": "type", "validated": true, "ani": 85.5462, "matched_fragments": 1439, "total_fragments": 2341, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora phytophila", "strain": "strain=DSM 105363", "accession": "GCA_023656545.1", "taxid": 709888, "species_taxid": 709888, "relation_to_type": "type", "validated": true, "ani": 84.9802, "matched_fragments": 1102, "total_fragments": 2341, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora acroterricola", "strain": "strain=5R2A7", "accession": "GCA_003172955.1", "taxid": 2202421, "species_taxid": 2202421, "relation_to_type": "type", "validated": true, "ani": 84.5835, "matched_fragments": 1270, "total_fragments": 2341, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora humida", "strain": "strain=MMS20-R1-14", "accession": "GCA_016901255.1", "taxid": 2809018, "species_taxid": 2809018, "relation_to_type": "type", "validated": true, "ani": 84.5432, "matched_fragments": 1477, "total_fragments": 2341, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora phaseoli", "strain": "strain=NBRC 110907", "accession": "GCA_016863675.1", "taxid": 1144548, "species_taxid": 1144548, "relation_to_type": "type", "validated": true, "ani": 83.2441, "matched_fragments": 1299, "total_fragments": 2341, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000145235.1", "gtdb_species": "s__Micromonospora aurantiaca", "ani": 100.0, "matched_fragments": 2341, "total_fragments": 2341, "gtdb_taxonomy": 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Micromonospora", "aurantiaca", "ATCC", "27029" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }