{ "type": "genome", "identifier": "GCF_000146345.1", "organism": "Peptoniphilus duerdenii ATCC BAA-1640", "title": "Peptoniphilus duerdenii ATCC BAA-1640", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Baylor College of Medicine", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000146345.1", "bioproject": "PRJNA224116", "biosample": "SAMN00117215", "wgs_master": "AEEH00000000.1", "refseq_category": "reference genome", "taxid": "862517", "species_taxid": "507750", "organism_name": "Peptoniphilus duerdenii ATCC BAA-1640", "infraspecific_name": "strain=ATCC BAA-1640", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2010/08/27", "asm_name": "ASM14634v1", "asm_submitter": "Baylor College of Medicine", "gbrs_paired_asm": "GCA_000146345.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/146/345/GCF_000146345.1_ASM14634v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2124844", "genome_size_ungapped": "2081526", "gc_percent": "34.000000", "replicon_count": "1", "scaffold_count": "16", "contig_count": "61", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000146345.1-RS_2024_05_01", "annotation_date": "2024-05-01", "total_gene_count": "1950", "protein_coding_gene_count": "1884", "non_coding_gene_count": "31", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2010-08-27", "dateModified": "2010-08-27", "datePublished": "2010-08-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Peptoniphilus duerdenii ATCC BAA-1640" ], "sample_taxid": [ "862517" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not determined" ], "sample_host_location_id": [], "data_size": "0.579 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2124844", "Number of Sequences": "16", "Longest Sequences (bp)": "2106333", "N50 (bp)": "2106333", "Gap Ratio (%)": "2.038644", "GCcontent (%)": "34.2", "Number of CDSs": "1924", "Average Protein Length": "317.5", "Coding Ratio (%)": "86.2", "Number of rRNAs": "2", "Number of tRNAs": "24", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Peptoniphilus obesi", "strain": "strain=ph1", "accession": "GCA_000311865.1", "taxid": 1472765, "species_taxid": 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