{ "type": "genome", "identifier": "GCF_000146675.1", "organism": "Hoylesella marshii DSM 16973 = JCM 13450", "title": "Hoylesella marshii DSM 16973 = JCM 13450", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Baylor College of Medicine", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000146675.1", "bioproject": "PRJNA224116", "biosample": "SAMN00117235", "wgs_master": "AEEI00000000.1", "refseq_category": "reference genome", "taxid": "862515", "species_taxid": "189722", "organism_name": "Hoylesella marshii DSM 16973 = JCM 13450", "infraspecific_name": "strain=DSM 16973", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2010/09/03", "asm_name": "ASM14667v1", "asm_submitter": "Baylor College of Medicine", "gbrs_paired_asm": "GCA_000146675.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/146/675/GCF_000146675.1_ASM14667v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2559358", "genome_size_ungapped": "2517013", "gc_percent": "47.500000", "replicon_count": "1", "scaffold_count": "11", "contig_count": "79", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000146675.1-RS_2024_04_07", "annotation_date": "2024-04-07", "total_gene_count": "2131", "protein_coding_gene_count": "2018", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2010-09-03", "dateModified": "2010-09-03", "datePublished": "2010-09-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Hoylesella marshii DSM 16973 = JCM 13450" ], "sample_taxid": [ "862515" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not determined" ], "sample_host_location_id": [], "data_size": "0.718 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2559358", "Number of Sequences": "11", "Longest Sequences (bp)": "2544623", "N50 (bp)": "2544623", "Gap Ratio (%)": "1.654516", "GCcontent (%)": "47.5", "Number of CDSs": "2045", "Average Protein Length": "345.0", "Coding Ratio (%)": "82.7", "Number of rRNAs": "3", "Number of tRNAs": "46", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Prevotella marshii", "strain": "strain=DSM 16973", "accession": "GCA_000146675.1", "taxid": 189722, "species_taxid": 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"matched_fragments": 103, "total_fragments": 849, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella maculosa", "strain": "strain=JCM 15638", "accession": "GCA_000613965.1", "taxid": 439703, "species_taxid": 439703, "relation_to_type": "type", "validated": true, "ani": 79.8371, "matched_fragments": 104, "total_fragments": 849, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hallella seregens", "strain": "strain=ATCC 51272", "accession": "GCA_000518545.1", "taxid": 52229, "species_taxid": 52229, "relation_to_type": "type", "validated": true, "ani": 79.5625, "matched_fragments": 92, "total_fragments": 849, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella buccae", "strain": "strain=ATCC 33574", "accession": "GCA_000184945.1", "taxid": 28126, "species_taxid": 28126, "relation_to_type": "type", "validated": true, "ani": 79.1216, "matched_fragments": 115, "total_fragments": 849, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella lascolaii", "strain": "strain=khD1", "accession": "GCA_900079775.1", "taxid": 1776379, "species_taxid": 1776379, "relation_to_type": "type", "validated": true, "ani": 78.9959, "matched_fragments": 62, "total_fragments": 849, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella loescheii", "strain": "strain=DSM 19665", "accession": "GCA_000378085.1", "taxid": 840, "species_taxid": 840, "relation_to_type": "type", "validated": true, "ani": 78.9341, "matched_fragments": 83, "total_fragments": 849, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella loescheii", "strain": "strain=JCM 12249", "accession": "GCA_000613485.1", "taxid": 840, "species_taxid": 840, "relation_to_type": "type", "validated": true, "ani": 78.6167, "matched_fragments": 86, "total_fragments": 849, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella shahii", "strain": "strain=JCM 12083", "accession": "GCA_000613445.1", "taxid": 228603, "species_taxid": 228603, "relation_to_type": "type", "validated": true, "ani": 78.4575, "matched_fragments": 73, "total_fragments": 849, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella loescheii", "strain": "strain=ATCC 15930", "accession": "GCA_000698925.1", "taxid": 840, "species_taxid": 840, "relation_to_type": "type", "validated": true, "ani": 78.3835, "matched_fragments": 87, "total_fragments": 849, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella shahii", "strain": "strain=DSM 15611", "accession": "GCA_003201715.1", "taxid": 228603, "species_taxid": 228603, "relation_to_type": "type", "validated": true, "ani": 78.3271, "matched_fragments": 72, "total_fragments": 849, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": 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