{
    "type": "genome",
    "identifier": "GCF_000147675.1",
    "organism": "Peptostreptococcus stomatis DSM 17678",
    "title": "Peptostreptococcus stomatis DSM 17678",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "J. Craig Venter Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000147675.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN00008344",
        "wgs_master": "ADGQ00000000.1",
        "refseq_category": "reference genome",
        "taxid": "596315",
        "species_taxid": "341694",
        "organism_name": "Peptostreptococcus stomatis DSM 17678",
        "infraspecific_name": "strain=DSM 17678",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2010/09/09",
        "asm_name": "ASM14767v1",
        "asm_submitter": "J. Craig Venter Institute",
        "gbrs_paired_asm": "GCA_000147675.2",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/147/675/GCF_000147675.1_ASM14767v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "1988044",
        "genome_size_ungapped": "1988044",
        "gc_percent": "36.500000",
        "replicon_count": "0",
        "scaffold_count": "74",
        "contig_count": "74",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000147675.1-RS_2024_12_13",
        "annotation_date": "2024-12-13",
        "total_gene_count": "1879",
        "protein_coding_gene_count": "1789",
        "non_coding_gene_count": "61",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2010-09-09",
    "dateModified": "2010-09-09",
    "datePublished": "2010-09-09",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Peptostreptococcus stomatis DSM 17678"
        ],
        "sample_taxid": [
            "596315"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not determined"
        ],
        "sample_host_location_id": [],
        "data_size": "0.559 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "1988044",
        "Number of Sequences": "74",
        "Longest Sequences (bp)": "180585",
        "N50 (bp)": "59765",
        "Gap Ratio (%)": "0.000050",
        "GCcontent (%)": "36.7",
        "Number of CDSs": "1806",
        "Average Protein Length": "317.3",
        "Coding Ratio (%)": "86.5",
        "Number of rRNAs": "4",
        "Number of tRNAs": "51",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Peptostreptococcus stomatis",
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                "accession": "GCA_000147675.2",
                "taxid": 341694,
                "species_taxid": 341694,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 630,
                "total_fragments": 633,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Peptostreptococcus anaerobius",
                "strain": "strain=NCTC11460",
                "accession": "GCA_900454605.1",
                "taxid": 1261,
                "species_taxid": 1261,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.9493,
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                "total_fragments": 633,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Peptostreptococcus anaerobius",
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                "accession": "GCA_000381525.1",
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                "species_taxid": 1261,
                "relation_to_type": "type",
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                "status": "below_threshold"
            },
            {
                "organism_name": "Peptostreptococcus canis",
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                "accession": "GCA_014229965.1",
                "taxid": 1159213,
                "species_taxid": 1159213,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 101,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Peptostreptococcus anaerobius",
                "strain": "strain=VPI 4330",
                "accession": "GCA_000318115.1",
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                "relation_to_type": "type",
                "validated": true,
                "ani": 79.7038,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Peptostreptococcus canis",
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                "accession": "GCA_017874285.1",
                "taxid": 1159213,
                "species_taxid": 1159213,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.3399,
                "matched_fragments": 103,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Peptostreptococcus porci",
                "strain": "strain=WCA-SAB-591-4A-A",
                "accession": "GCA_009695815.1",
                "taxid": 2652282,
                "species_taxid": 2652282,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.0433,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Peptostreptococcus russellii",
                "strain": "strain=RT-10B",
                "accession": "GCA_003012055.1",
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                "species_taxid": 215200,
                "relation_to_type": "type",
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                "ani": 78.4418,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
            {
                "accession": "GCF_000147675.1",
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                "matched_fragments": 630,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Peptostreptococcus",
                "ani_circumscription_radius": 95.0,
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                "min_intra_species_ani": "97.69",
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            },
            {
                "accession": "GCA_900759325.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Peptostreptococcus",
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                "num_clustered_genomes": 4,
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            },
            {
                "accession": "GCF_000758885.1",
                "gtdb_species": "s__Peptostreptococcus sp000758885",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Peptostreptococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_000381525.1",
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                "accession": "GCF_900112955.1",
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            },
            {
                "accession": "GCF_900240845.1",
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        ]
    },
    "_bac2feature": {
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        "cell_length": -0.097,
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        "growth_tmp": 37.0,
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        "gc_content": 36.66,
        "coding_genes": null,
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        "gram_stain": 1.0,
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        "bacillus_cell_shape": 0.0,
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        "coccobacillus_cell_shape": 0.0,
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    "_genome_taxon": [
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        "stomatis",
        "DSM",
        "17678"
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}