{
    "type": "genome",
    "identifier": "GCF_000148645.1",
    "organism": "Ferrimonas balearica DSM 9799",
    "title": "Ferrimonas balearica DSM 9799",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "US DOE Joint Genome Institute (JGI-PGF)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000148645.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN00115627",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "550540",
        "species_taxid": "44012",
        "organism_name": "Ferrimonas balearica DSM 9799",
        "infraspecific_name": "strain=DSM 9799",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2010/09/24",
        "asm_name": "ASM14864v1",
        "asm_submitter": "US DOE Joint Genome Institute (JGI-PGF)",
        "gbrs_paired_asm": "GCA_000148645.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/148/645/GCF_000148645.1_ASM14864v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4279159",
        "genome_size_ungapped": "4279159",
        "gc_percent": "60.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000148645.1-RS_2024_05_01",
        "annotation_date": "2024-05-01",
        "total_gene_count": "3937",
        "protein_coding_gene_count": "3776",
        "non_coding_gene_count": "149",
        "pubmed_id": "21304747"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2010-09-24",
    "dateModified": "2010-09-24",
    "datePublished": "2010-09-24",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Ferrimonas balearica DSM 9799"
        ],
        "sample_taxid": [
            "550540"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [
            "None"
        ],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Spain"
        ],
        "sample_host_location_id": [],
        "data_size": "1.198 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4279159",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "4279159",
        "N50 (bp)": "4279159",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "60.2",
        "Number of CDSs": "3815",
        "Average Protein Length": "332.8",
        "Coding Ratio (%)": "89.0",
        "Number of rRNAs": "22",
        "Number of tRNAs": "123",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Ferrimonas balearica",
                "strain": "strain=DSM 9799",
                "accession": "GCA_000148645.1",
                "taxid": 44012,
                "species_taxid": 44012,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1425,
                "total_fragments": 1426,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Ferrimonas marina",
                "strain": "strain=DSM 16917",
                "accession": "GCA_900129905.1",
                "taxid": 299255,
                "species_taxid": 299255,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.0595,
                "matched_fragments": 684,
                "total_fragments": 1426,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ferrimonas marina",
                "strain": "strain=NBRC 102583",
                "accession": "GCA_001571125.1",
                "taxid": 299255,
                "species_taxid": 299255,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.0409,
                "matched_fragments": 659,
                "total_fragments": 1426,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ferrimonas sediminicola",
                "strain": "strain=IMCC35001",
                "accession": "GCA_005116715.1",
                "taxid": 2569538,
                "species_taxid": 2569538,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9276,
                "matched_fragments": 443,
                "total_fragments": 1426,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ferrimonas futtsuensis",
                "strain": "strain=DSM 18154",
                "accession": "GCA_000422645.1",
                "taxid": 364764,
                "species_taxid": 364764,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7551,
                "matched_fragments": 445,
                "total_fragments": 1426,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ferrimonas sediminum",
                "strain": "strain=DSM 23317",
                "accession": "GCA_900100175.1",
                "taxid": 718193,
                "species_taxid": 718193,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.161,
                "matched_fragments": 406,
                "total_fragments": 1426,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ferrimonas kyonanensis",
                "strain": "strain=DSM 18153",
                "accession": "GCA_000425405.1",
                "taxid": 364763,
                "species_taxid": 364763,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0651,
                "matched_fragments": 399,
                "total_fragments": 1426,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ferrimonas senticii",
                "strain": "strain=DSM 18821",
                "accession": "GCA_000422665.1",
                "taxid": 394566,
                "species_taxid": 394566,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9542,
                "matched_fragments": 313,
                "total_fragments": 1426,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas hydrolytica",
                "strain": "strain=DSWY01",
                "accession": "GCA_021495345.2",
                "taxid": 2493633,
                "species_taxid": 2493633,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0388,
                "matched_fragments": 149,
                "total_fragments": 1426,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Photobacterium galatheae",
                "strain": "strain=DSM 100496",
                "accession": "GCA_023653475.1",
                "taxid": 1654360,
                "species_taxid": 1654360,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8184,
                "matched_fragments": 90,
                "total_fragments": 1426,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas faucium",
                "strain": "strain=BML-PP048",
                "accession": "GCA_021602585.1",
                "taxid": 2740518,
                "species_taxid": 2740518,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5399,
                "matched_fragments": 124,
                "total_fragments": 1426,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas capeferrum",
                "strain": "strain=WCS358",
                "accession": "GCA_022548835.1",
                "taxid": 1495066,
                "species_taxid": 1495066,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5112,
                "matched_fragments": 105,
                "total_fragments": 1426,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas faucium",
                "strain": "strain=BML-PP048",
                "accession": "GCA_013373935.1",
                "taxid": 2740518,
                "species_taxid": 2740518,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5083,
                "matched_fragments": 118,
                "total_fragments": 1426,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000148645.1",
                "gtdb_species": "s__Ferrimonas balearica",
                "ani": 100.0,
                "matched_fragments": 1425,
                "total_fragments": 1426,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Shewanellaceae;g__Ferrimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_900129905.1",
                "gtdb_species": "s__Ferrimonas marina",
                "ani": 80.0513,
                "matched_fragments": 685,
                "total_fragments": 1426,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Shewanellaceae;g__Ferrimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_005116715.1",
                "gtdb_species": "s__Ferrimonas sp005116715",
                "ani": 78.9193,
                "matched_fragments": 444,
                "total_fragments": 1426,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Shewanellaceae;g__Ferrimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000422645.1",
                "gtdb_species": "s__Ferrimonas futtsuensis",
                "ani": 78.7307,
                "matched_fragments": 447,
                "total_fragments": 1426,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Shewanellaceae;g__Ferrimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900100175.1",
                "gtdb_species": "s__Ferrimonas sediminum",
                "ani": 78.1485,
                "matched_fragments": 407,
                "total_fragments": 1426,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Shewanellaceae;g__Ferrimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000425405.1",
                "gtdb_species": "s__Ferrimonas kyonanensis",
                "ani": 78.0937,
                "matched_fragments": 398,
                "total_fragments": 1426,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Shewanellaceae;g__Ferrimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000422665.1",
                "gtdb_species": "s__Ferrimonas senticii",
                "ani": 77.9533,
                "matched_fragments": 313,
                "total_fragments": 1426,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Shewanellaceae;g__Ferrimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001870485.1",
                "gtdb_species": "s__Oceanisphaera psychrotolerans",
                "ani": 77.2025,
                "matched_fragments": 177,
                "total_fragments": 1426,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Oceanisphaera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002936955.1",
                "gtdb_species": "s__Oceanisphaera arctica",
                "ani": 77.074,
                "matched_fragments": 153,
                "total_fragments": 1426,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Oceanisphaera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.523,
        "cell_length": 0.079,
        "doubling_h": null,
        "growth_tmp": 28.0,
        "optimum_tmp": 39.5,
        "optimum_ph": 7.5,
        "genome_size": 4279159.2,
        "gc_content": 60.1,
        "coding_genes": 3747.333,
        "rRNA16S_genes": 7.0,
        "tRNA_genes": 121.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 1.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Ferrimonas",
        "balearica",
        "DSM",
        "9799"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}