{ "type": "genome", "identifier": "GCF_000148995.1", "organism": "Listeria grayi DSM 20601", "title": "Listeria grayi DSM 20601", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Baylor College of Medicine", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000148995.1", "bioproject": "PRJNA224116", "biosample": "SAMN00001446", "wgs_master": "ACCR00000000.2", "refseq_category": "na", "taxid": "525367", "species_taxid": "1641", "organism_name": "Listeria grayi DSM 20601", "infraspecific_name": "strain=DSM 20601", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2010/11/05", "asm_name": "ASM14899v1", "asm_submitter": "Baylor College of Medicine", "gbrs_paired_asm": "GCA_000148995.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/148/995/GCF_000148995.1_ASM14899v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2598321", "genome_size_ungapped": "2589961", "gc_percent": "41.500000", "replicon_count": "2", "scaffold_count": "4", "contig_count": "6", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000148995.1-RS_2024_04_04", "annotation_date": "2024-04-04", "total_gene_count": "2626", "protein_coding_gene_count": "2536", "non_coding_gene_count": "67", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2010-11-05", "dateModified": "2010-11-05", "datePublished": "2010-11-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Listeria grayi DSM 20601" ], "sample_taxid": [ "525367" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not determined" ], "sample_host_location_id": [], "data_size": "0.734 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2598321", "Number of Sequences": "4", "Longest Sequences (bp)": "1486973", "N50 (bp)": "1486973", "Gap Ratio (%)": "0.321746", "GCcontent (%)": "41.6", "Number of CDSs": "2591", "Average Protein Length": "297.1", "Coding Ratio (%)": "88.9", "Number of rRNAs": "7", "Number of tRNAs": "52", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Listeria grayi", "strain": "strain=DSM 20601", "accession": "GCA_000148995.1", "taxid": 1641, "species_taxid": 1641, "relation_to_type": "type", "validated": true, "ani": 99.9979, "matched_fragments": 860, "total_fragments": 864, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Listeria grayi", "strain": "strain=NCTC 10815", "accession": "GCA_900453005.1", "taxid": 1641, "species_taxid": 1641, "relation_to_type": "type", "validated": true, "ani": 99.4771, "matched_fragments": 831, "total_fragments": 864, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Listeria innocua", "strain": "strain=F4078", "accession": "GCA_024721565.1", "taxid": 1642, "species_taxid": 1642, "relation_to_type": "type", "validated": true, "ani": 79.0402, "matched_fragments": 154, "total_fragments": 864, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Listeria innocua", "strain": "strain=F4078", "accession": "GCA_014527425.1", "taxid": 1642, "species_taxid": 1642, "relation_to_type": "type", "validated": true, "ani": 78.5204, "matched_fragments": 144, "total_fragments": 864, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Listeria goaensis", "strain": "strain=ILCC801", "accession": "GCA_900186125.1", "taxid": 1649188, "species_taxid": 1649188, "relation_to_type": "type", "validated": true, "ani": 78.5072, "matched_fragments": 96, "total_fragments": 864, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Listeria monocytogenes", "strain": "strain=NCTC10357", "accession": "GCA_900187225.1", "taxid": 1639, "species_taxid": 1639, "relation_to_type": "type", "validated": true, "ani": 78.4794, "matched_fragments": 132, "total_fragments": 864, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Listeria monocytogenes", "strain": "strain=FSL F6-684", "accession": "GCA_000743465.1", "taxid": 1639, "species_taxid": 1639, "relation_to_type": "type", "validated": true, "ani": 78.4712, "matched_fragments": 132, "total_fragments": 864, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Listeria farberi", "strain": "strain=FSL L7-0091", "accession": "GCA_014229245.1", "taxid": 2713500, "species_taxid": 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