{ "type": "genome", "identifier": "GCF_000152625.1", "organism": "Roseovarius nubinhibens ISM", "title": "Roseovarius nubinhibens ISM", "description": "na", "data type": "Genome sequencing and assembly", "organization": "The Gordon and Betty Moore Foundation Marine Microbiology Initiative", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000152625.1", "bioproject": "PRJNA224116", "biosample": "SAMN02436080", "wgs_master": "AALY00000000.1", "refseq_category": "reference genome", "taxid": "89187", "species_taxid": "314263", "organism_name": "Roseovarius nubinhibens ISM", "infraspecific_name": "strain=ISM", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2006/05/04", "asm_name": "ASM15262v1", "asm_submitter": "The Gordon and Betty Moore Foundation Marine Microbiology Initiative", "gbrs_paired_asm": "GCA_000152625.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/152/625/GCF_000152625.1_ASM15262v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3676244", "genome_size_ungapped": "3668667", "gc_percent": "64.000000", "replicon_count": "0", "scaffold_count": "4", "contig_count": "10", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000152625.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "3561", "protein_coding_gene_count": "3488", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2006-05-04", "dateModified": "2006-05-04", "datePublished": "2006-05-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Roseovarius nubinhibens ISM" ], "sample_taxid": [ "89187" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.008 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3676244", "Number of Sequences": "4", "Longest Sequences (bp)": "3576288", "N50 (bp)": "3576288", "Gap Ratio (%)": "0.206107", "GCcontent (%)": "63.9", "Number of CDSs": "3513", "Average Protein Length": "313.8", "Coding Ratio (%)": "90.0", "Number of rRNAs": "6", "Number of tRNAs": "49", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Roseovarius nubinhibens", "strain": "strain=ISM", "accession": "GCA_000152625.1", "taxid": 314263, "species_taxid": 314263, "relation_to_type": "type", 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius lutimaris", "strain": "strain=DSM 28463", "accession": "GCA_900115165.1", "taxid": 1005928, "species_taxid": 1005928, "relation_to_type": "type", "validated": true, "ani": 79.0038, "matched_fragments": 520, "total_fragments": 1224, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius gaetbuli", "strain": "strain=CECT 8370", "accession": "GCA_900172365.1", "taxid": 1356575, "species_taxid": 1356575, "relation_to_type": "type", "validated": true, "ani": 78.9098, "matched_fragments": 526, "total_fragments": 1224, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger marinus", "strain": "strain=DSM 26424", "accession": "GCA_900100085.1", "taxid": 555512, "species_taxid": 555512, "relation_to_type": "type", "validated": true, "ani": 78.8456, "matched_fragments": 480, "total_fragments": 1224, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassobius mangrovi", "strain": "strain=GS-10", "accession": "GCA_009857745.1", "taxid": 2692236, "species_taxid": 2692236, "relation_to_type": "type", "validated": true, "ani": 78.8247, "matched_fragments": 496, "total_fragments": 1224, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger bermudensis", "strain": "strain=HTCC2601", "accession": "GCA_000153725.1", "taxid": 344736, "species_taxid": 344736, "relation_to_type": "type", "validated": true, "ani": 78.6301, "matched_fragments": 484, "total_fragments": 1224, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius aestuarii", "strain": "strain=KCTC 22174", "accession": "GCA_019966515.1", "taxid": 475083, "species_taxid": 475083, "relation_to_type": "type", "validated": true, "ani": 78.537, "matched_fragments": 431, "total_fragments": 1224, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger profundus", "strain": "strain=JLT2016", "accession": "GCA_001969385.1", "taxid": 1229727, "species_taxid": 1229727, "relation_to_type": "type", "validated": true, "ani": 78.5161, "matched_fragments": 432, "total_fragments": 1224, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinihabitans flavidus", "strain": "strain=DSM 27842", "accession": "GCA_900110425.1", "taxid": 569882, "species_taxid": 569882, "relation_to_type": "type", "validated": true, "ani": 78.458, "matched_fragments": 390, "total_fragments": 1224, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria marisrubri", "strain": "strain=ZGT118", "accession": "GCA_001507595.1", "taxid": 1685379, "species_taxid": 1685379, "relation_to_type": "type", "validated": true, "ani": 78.4464, "matched_fragments": 445, "total_fragments": 1224, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger profundus", "strain": "strain=CGMCC 1.12377", "accession": "GCA_014637265.1", 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