{ "type": "genome", "identifier": "GCF_000152825.2", "organism": "Parvularcula bermudensis HTCC2503", "title": "Parvularcula bermudensis HTCC2503", "description": "na", "data type": "Genome sequencing and assembly", "organization": "The Gordon and Betty Moore Foundation Marine Microbiology Initiative", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000152825.2", "bioproject": "PRJNA224116", "biosample": "SAMN02603918", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "314260", "species_taxid": "208216", "organism_name": "Parvularcula bermudensis HTCC2503", "infraspecific_name": "strain=HTCC2503", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2010/08/16", "asm_name": "ASM15282v2", "asm_submitter": "The Gordon and Betty Moore Foundation Marine Microbiology Initiative", "gbrs_paired_asm": "GCA_000152825.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/152/825/GCF_000152825.2_ASM15282v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2902643", "genome_size_ungapped": "2902643", "gc_percent": "60.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000152825.2-RS_2024_03_27", "annotation_date": "2024-03-27", "total_gene_count": "2699", "protein_coding_gene_count": "2635", "non_coding_gene_count": "50", "pubmed_id": "21037002" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2010-08-16", "dateModified": "2010-08-16", "datePublished": "2010-08-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Parvularcula bermudensis HTCC2503" ], "sample_taxid": [ "314260" ], "sample_host_organism": [], 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"s__Marinicaulis sp002704915", "ani": 75.8328, "matched_fragments": 52, "total_fragments": 967, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Parvularculaceae;g__Marinicaulis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.166, "cell_length": 0.231, "doubling_h": null, "growth_tmp": 30.0, "optimum_tmp": 26.75, "optimum_ph": 7.0, "genome_size": 2902642.4, "gc_content": 60.7, "coding_genes": 2633.0, "rRNA16S_genes": 1.0, "tRNA_genes": 43.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": 1.0, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Parvularcula", "bermudensis", "HTCC2503" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }