{
    "type": "genome",
    "identifier": "GCF_000153205.1",
    "organism": "Nitrococcus mobilis Nb-231",
    "title": "Nitrococcus mobilis Nb-231",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "The Gordon and Betty Moore Foundation Marine Microbiology Initiative",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000153205.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02436141",
        "wgs_master": "AAOF00000000.1",
        "refseq_category": "reference genome",
        "taxid": "314278",
        "species_taxid": "35797",
        "organism_name": "Nitrococcus mobilis Nb-231",
        "infraspecific_name": "strain=Nb-231",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2006/04/11",
        "asm_name": "ASM15320v1",
        "asm_submitter": "The Gordon and Betty Moore Foundation Marine Microbiology Initiative",
        "gbrs_paired_asm": "GCA_000153205.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/153/205/GCF_000153205.1_ASM15320v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3623681",
        "genome_size_ungapped": "3617638",
        "gc_percent": "60.000000",
        "replicon_count": "0",
        "scaffold_count": "9",
        "contig_count": "43",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000153205.1-RS_2024_12_13",
        "annotation_date": "2024-12-13",
        "total_gene_count": "3467",
        "protein_coding_gene_count": "3310",
        "non_coding_gene_count": "53",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2006-04-11",
    "dateModified": "2006-04-11",
    "datePublished": "2006-04-11",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Nitrococcus mobilis Nb-231"
        ],
        "sample_taxid": [
            "314278"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "1.024 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3623681",
        "Number of Sequences": "9",
        "Longest Sequences (bp)": "3613155",
        "N50 (bp)": "3613155",
        "Gap Ratio (%)": "0.166764",
        "GCcontent (%)": "60.0",
        "Number of CDSs": "3481",
        "Average Protein Length": "295.7",
        "Coding Ratio (%)": "85.2",
        "Number of rRNAs": "3",
        "Number of tRNAs": "45",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Nitrococcus mobilis",
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                "relation_to_type": "type",
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                "matched_fragments": 1204,
                "total_fragments": 1204,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Arhodomonas aquaeolei",
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                "accession": "GCA_000374645.1",
                "taxid": 2369,
                "species_taxid": 2369,
                "relation_to_type": "type",
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                "ani": 76.4475,
                "matched_fragments": 95,
                "total_fragments": 1204,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Spiribacter aquaticus",
                "strain": "strain=SP30",
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                "species_taxid": 1935996,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Spiribacter vilamensis",
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                "accession": "GCA_007625165.1",
                "taxid": 531306,
                "species_taxid": 531306,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1443,
                "matched_fragments": 55,
                "total_fragments": 1204,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Spiribacter vilamensis",
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                "accession": "GCA_004217415.1",
                "taxid": 531306,
                "species_taxid": 531306,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.8864,
                "matched_fragments": 54,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas aeruginosa",
                "strain": "strain=DSM 50071",
                "accession": "GCA_024169805.1",
                "taxid": 287,
                "species_taxid": 287,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.5957,
                "matched_fragments": 53,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas aeruginosa",
                "strain": "strain=CCUG 551",
                "accession": "GCA_008801675.1",
                "taxid": 287,
                "species_taxid": 287,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.3604,
                "matched_fragments": 52,
                "total_fragments": 1204,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
            {
                "accession": "GCF_000153205.1",
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                "total_fragments": 1204,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Nitrococcales;f__Nitrococcaceae;g__Nitrococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_003149435.1",
                "gtdb_species": "s__E85 sp003149435",
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                "total_fragments": 1204,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Nitrococcales;f__Nitrococcaceae;g__E85",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000374645.1",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009295635.1",
                "gtdb_species": "s__S0819 sp009295635",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Nitrococcales;f__AK92;g__S0819",
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                "mean_intra_species_ani": "100.00",
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                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_018623495.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Halothiobacillales;f__JAAZVP01;g__JAAZVP01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_004217415.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Nitrococcales;f__Nitrococcaceae;g__Spiribacter",
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                "status": "-"
            },
            {
                "accession": "GCA_012523465.1",
                "gtdb_species": "s__JAAYIK01 sp012523465",
                "ani": 75.6322,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Nitrococcales;f__AK92;g__JAAYIK01",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
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        "optimum_tmp": 27.5,
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        "gc_content": 60.0,
        "coding_genes": null,
        "rRNA16S_genes": null,
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        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": 1.0,
        "facultative_respiration": 0.0,
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        "mesophilic_range_tmp": 1.0,
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        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
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    "_genome_taxon": [
        "Nitrococcus",
        "mobilis",
        "Nb-231"
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}