{ "type": "genome", "identifier": "GCF_000153625.3", "organism": "Fusobacterium polymorphum ATCC 10953", "title": "Fusobacterium polymorphum ATCC 10953", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Baylor College of Medicine", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000153625.3", "bioproject": "PRJNA224116", "biosample": "SAMN02469324", "wgs_master": "AARG00000000.1", "refseq_category": "na", "taxid": "393480", "species_taxid": "76857", "organism_name": "Fusobacterium polymorphum ATCC 10953", "infraspecific_name": "strain=ATCC 10953", "isolate": "na", "version_status": "latest", "assembly_level": "Chromosome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2007/05/30", "asm_name": "ASM15362v1", "asm_submitter": "Baylor College of Medicine", "gbrs_paired_asm": "GCA_000153625.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/153/625/GCF_000153625.3_ASM15362v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2441632", "genome_size_ungapped": "2440232", "gc_percent": "27.000000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "15", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000153625.3-RS_2024_04_08", "annotation_date": "2024-04-08", "total_gene_count": "2392", "protein_coding_gene_count": "2284", "non_coding_gene_count": "50", "pubmed_id": "17668047" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2007-05-30", "dateModified": "2007-05-30", "datePublished": "2007-05-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Fusobacterium polymorphum ATCC 10953" ], "sample_taxid": [ "393480" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.648 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2441532", "Number of Sequences": "2", "Longest Sequences (bp)": "2429598", "N50 (bp)": "2429598", "Gap Ratio (%)": "0.053286", "GCcontent (%)": "26.8", "Number of CDSs": "2352", "Average Protein Length": "314.9", "Coding Ratio (%)": "91.0", "Number of rRNAs": "3", "Number of tRNAs": "45", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Fusobacterium nucleatum subsp. polymorphum", "strain": "strain=ATCC 10953", "accession": "GCA_000153625.1", "taxid": 76857, "species_taxid": 851, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 812, "total_fragments": 812, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Fusobacterium nucleatum subsp. polymorphum", "strain": "strain=NCTC10562", "accession": "GCA_001457555.1", "taxid": 76857, "species_taxid": 851, "relation_to_type": "type", "validated": true, "ani": 99.9606, "matched_fragments": 808, "total_fragments": 812, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Fusobacterium hwasookii", "strain": "strain=ChDC F128", "accession": "GCA_000292935.1", "taxid": 1583098, "species_taxid": 1583098, "relation_to_type": "type", "validated": true, "ani": 92.8627, "matched_fragments": 656, "total_fragments": 812, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fusobacterium hwasookii", "strain": "strain=KCOM 1249", "accession": "GCA_014217355.1", "taxid": 1583098, "species_taxid": 1583098, "relation_to_type": "type", "validated": true, "ani": 92.7873, "matched_fragments": 668, "total_fragments": 812, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fusobacterium canifelinum", "strain": "strain=FDAARGOS_1126", "accession": "GCA_016724785.1", "taxid": 285729, "species_taxid": 285729, "relation_to_type": "type", "validated": true, "ani": 92.6147, "matched_fragments": 631, "total_fragments": 812, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001457555.1", "gtdb_species": "s__Fusobacterium polymorphum", "ani": 99.9606, "matched_fragments": 808, "total_fragments": 812, "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.55", "min_intra_species_ani": "95.37", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.79", "num_clustered_genomes": 30, "status": "conclusive" }, { "accession": "GCF_002573625.1", "gtdb_species": "s__Fusobacterium nucleatum_D", "ani": 94.492, "matched_fragments": 661, "total_fragments": 812, "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014217355.1", "gtdb_species": "s__Fusobacterium hwasookii", "ani": 92.8267, "matched_fragments": 666, "total_fragments": 812, "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.78", "min_intra_species_ani": "97.42", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.85", "num_clustered_genomes": 10, "status": "-" }, { "accession": "GCF_016724785.1", "gtdb_species": "s__Fusobacterium canifelinum", "ani": 92.6436, "matched_fragments": 630, "total_fragments": 812, "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.22", "min_intra_species_ani": "98.13", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.87", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_000007325.1", "gtdb_species": "s__Fusobacterium nucleatum", "ani": 91.2825, "matched_fragments": 596, "total_fragments": 812, "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.30", "min_intra_species_ani": "95.23", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.85", "num_clustered_genomes": 13, "status": "-" }, { "accession": "GCA_000182945.1", "gtdb_species": "s__Fusobacterium vincentii", "ani": 90.7865, "matched_fragments": 455, "total_fragments": 812, "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.44", "min_intra_species_ani": "96.10", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.73", "num_clustered_genomes": 18, "status": "-" }, { "accession": "GCF_000158275.2", "gtdb_species": "s__Fusobacterium animalis", "ani": 90.2174, "matched_fragments": 609, "total_fragments": 812, "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.57", "min_intra_species_ani": "95.72", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.80", "num_clustered_genomes": 29, "status": "-" }, { "accession": "GCF_008633215.1", "gtdb_species": "s__Fusobacterium nucleatum_J", "ani": 89.8467, "matched_fragments": 532, "total_fragments": 812, "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.47", "min_intra_species_ani": "98.47", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.86", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.211, "cell_length": 0.115, "doubling_h": -0.328, "growth_tmp": 36.952, "optimum_tmp": 33.86, "optimum_ph": 7.0, "genome_size": 2451454.312, "gc_content": 29.792, "coding_genes": 2416.99, "rRNA16S_genes": 5.708, "tRNA_genes": 53.14, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.142, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.857, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Fusobacterium", "polymorphum", "ATCC", "10953" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }