{ "type": "genome", "identifier": "GCF_000153705.1", "organism": "Fulvimarina pelagi HTCC2506", "title": "Fulvimarina pelagi HTCC2506", "description": "na", "data type": "Genome sequencing and assembly", "organization": "The Gordon and Betty Moore Foundation Marine Microbiology Initiative", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000153705.1", "bioproject": "PRJNA224116", "biosample": "SAMN02436126", "wgs_master": "AATP00000000.1", "refseq_category": "reference genome", "taxid": "314231", "species_taxid": "217511", "organism_name": "Fulvimarina pelagi HTCC2506", "infraspecific_name": "strain=HTCC2506", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2006/10/23", "asm_name": "ASM15370v1", "asm_submitter": "The Gordon and Betty Moore Foundation Marine Microbiology Initiative", "gbrs_paired_asm": "GCA_000153705.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/153/705/GCF_000153705.1_ASM15370v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3806238", "genome_size_ungapped": "3802689", "gc_percent": "61.000000", "replicon_count": "0", "scaffold_count": "4", "contig_count": "20", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2023-04-24", "total_gene_count": "3529", "protein_coding_gene_count": "3406", "non_coding_gene_count": "62", "pubmed_id": "20639329" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2006-10-23", "dateModified": "2006-10-23", "datePublished": "2006-10-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Fulvimarina pelagi HTCC2506" ], "sample_taxid": [ "314231" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.064 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3806238", "Number of Sequences": "4", "Longest Sequences (bp)": "3705815", "N50 (bp)": "3705815", "Gap Ratio (%)": "0.093242", "GCcontent (%)": "61.2", "Number of CDSs": "3507", "Average Protein Length": "310.3", "Coding Ratio (%)": "85.8", "Number of rRNAs": "9", "Number of tRNAs": "55", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Fulvimarina pelagi", "strain": "strain=HTCC2506", "accession": "GCA_000153705.1", "taxid": 217511, "species_taxid": 217511, 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"matched_fragments": 460, "total_fragments": 1267, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantimonas manganoxydans", "strain": "strain=SI85-9A1", "accession": "GCA_000153465.1", "taxid": 651183, "species_taxid": 651183, "relation_to_type": "type", "validated": true, "ani": 78.5011, "matched_fragments": 447, "total_fragments": 1267, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantimonas coralicida", "strain": "strain=DSM 14790", "accession": "GCA_001463825.1", "taxid": 182270, "species_taxid": 182270, "relation_to_type": "type", "validated": true, "ani": 78.4793, "matched_fragments": 438, "total_fragments": 1267, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiella sonneratiae", "strain": "strain=MQZ13P-4", "accession": "GCA_017353515.1", "taxid": 2816856, "species_taxid": 2816856, "relation_to_type": "type", "validated": true, "ani": 78.4751, "matched_fragments": 455, "total_fragments": 1267, 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"organism_name": "Aurantimonas endophytica", "strain": "strain=KCTC 52296", "accession": "GCA_024105745.1", "taxid": 1522175, "species_taxid": 1522175, "relation_to_type": "type", "validated": true, "ani": 78.2864, "matched_fragments": 410, "total_fragments": 1267, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantimonas endophytica", "strain": "strain=DSM 103570", "accession": "GCA_014196845.1", "taxid": 1522175, "species_taxid": 1522175, "relation_to_type": "type", "validated": true, "ani": 78.2011, "matched_fragments": 416, "total_fragments": 1267, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aureimonas pseudogalii", "strain": "strain=DSM 102238", "accession": "GCA_014196835.1", "taxid": 1744844, "species_taxid": 1744844, "relation_to_type": "type", "validated": true, "ani": 77.7798, "matched_fragments": 326, "total_fragments": 1267, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella daejeonensis", 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