{
    "type": "genome",
    "identifier": "GCF_000154305.1",
    "organism": "Anaerostipes caccae L1-92",
    "title": "Anaerostipes caccae L1-92",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Washington University Genome Sequencing Center",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000154305.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN00627053",
        "wgs_master": "ABAX00000000.3",
        "refseq_category": "na",
        "taxid": "411490",
        "species_taxid": "105841",
        "organism_name": "Anaerostipes caccae L1-92",
        "infraspecific_name": "strain=DSM 14662",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2007/11/14",
        "asm_name": "ASM15430v1",
        "asm_submitter": "Washington University Genome Sequencing Center",
        "gbrs_paired_asm": "GCA_000154305.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/154/305/GCF_000154305.1_ASM15430v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3606936",
        "genome_size_ungapped": "3605636",
        "gc_percent": "44.500000",
        "replicon_count": "0",
        "scaffold_count": "26",
        "contig_count": "39",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2024-02-28",
        "total_gene_count": "3561",
        "protein_coding_gene_count": "3426",
        "non_coding_gene_count": "92",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2007-11-14",
    "dateModified": "2007-11-14",
    "datePublished": "2007-11-14",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Anaerostipes caccae L1-92"
        ],
        "sample_taxid": [
            "411490"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not determined"
        ],
        "sample_host_location_id": [],
        "data_size": "1.018 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3606936",
        "Number of Sequences": "26",
        "Longest Sequences (bp)": "760746",
        "N50 (bp)": "261254",
        "Gap Ratio (%)": "0.036042",
        "GCcontent (%)": "44.3",
        "Number of CDSs": "3499",
        "Average Protein Length": "308.6",
        "Coding Ratio (%)": "89.8",
        "Number of rRNAs": "9",
        "Number of tRNAs": "71",
        "Number of CRISPRs": "9"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Anaerostipes caccae",
                "strain": "strain=DSM 14662",
                "accession": "GCA_000154305.1",
                "taxid": 105841,
                "species_taxid": 105841,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1187,
                "total_fragments": 1190,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Anaerostipes caccae",
                "strain": "strain=DSM 14662",
                "accession": "GCA_025146005.1",
                "taxid": 105841,
                "species_taxid": 105841,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.994,
                "matched_fragments": 1182,
                "total_fragments": 1190,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Anaerostipes caccae",
                "strain": "strain=JCM 13470",
                "accession": "GCA_014467075.1",
                "taxid": 105841,
                "species_taxid": 105841,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9927,
                "matched_fragments": 1184,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Anaerostipes caccae",
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                "accession": "GCA_014131675.1",
                "taxid": 105841,
                "species_taxid": 105841,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9921,
                "matched_fragments": 1184,
                "total_fragments": 1190,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Anaerostipes hominis",
                "strain": "strain=BG01",
                "accession": "GCA_002270485.1",
                "taxid": 2025494,
                "species_taxid": 2025494,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.0153,
                "matched_fragments": 800,
                "total_fragments": 1190,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Anaerostipes rhamnosivorans",
                "strain": "strain=1y2",
                "accession": "GCA_005280655.1",
                "taxid": 1229621,
                "species_taxid": 1229621,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.6785,
                "matched_fragments": 727,
                "total_fragments": 1190,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "[Ruminococcus] gnavus",
                "strain": "strain=JCM6515",
                "accession": "GCA_008121495.1",
                "taxid": 33038,
                "species_taxid": 33038,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 79.6748,
                "matched_fragments": 63,
                "total_fragments": 1190,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hungatella hathewayi",
                "strain": "strain=DSM 13479",
                "accession": "GCA_025149285.1",
                "taxid": 154046,
                "species_taxid": 154046,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 78.7878,
                "matched_fragments": 73,
                "total_fragments": 1190,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_014467075.1",
                "gtdb_species": "s__Anaerostipes caccae",
                "ani": 99.9927,
                "matched_fragments": 1184,
                "total_fragments": 1190,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Anaerostipes",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.81",
                "min_intra_species_ani": "98.30",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 11,
                "status": "conclusive"
            },
            {
                "accession": "GCA_000508985.1",
                "gtdb_species": "s__Anaerostipes sp000508985",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Anaerostipes",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.99",
                "min_intra_species_ani": "98.66",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 11,
                "status": "-"
            },
            {
                "accession": "GCF_005280655.1",
                "gtdb_species": "s__Anaerostipes rhamnosivorans",
                "ani": 82.6484,
                "matched_fragments": 727,
                "total_fragments": 1190,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Anaerostipes",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.93",
                "min_intra_species_ani": "99.92",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_018381315.1",
                "gtdb_species": "s__Anaerostipes sp018381315",
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                "matched_fragments": 750,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Anaerostipes",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902362875.1",
                "gtdb_species": "s__Anaerostipes sp900066705",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Anaerostipes",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.16",
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                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_016586355.1",
                "gtdb_species": "s__Anaerostipes butyraticus",
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                "matched_fragments": 157,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Anaerostipes",
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                "mean_intra_species_ani": "99.19",
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            },
            {
                "accession": "GCF_001404655.1",
                "gtdb_species": "s__Anaerostipes hadrus_A",
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                "matched_fragments": 91,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Anaerostipes",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.11",
                "min_intra_species_ani": "98.66",
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            },
            {
                "accession": "GCA_019114985.1",
                "gtdb_species": "s__Anaerostipes excrementavium",
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                "matched_fragments": 128,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Anaerostipes",
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                "mean_intra_species_ani": "99.16",
                "min_intra_species_ani": "98.38",
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                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 3,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.302,
        "cell_length": 0.301,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 39.5,
        "optimum_ph": 5.75,
        "genome_size": 3605636.0,
        "gc_content": 44.3,
        "coding_genes": 2835.5,
        "rRNA16S_genes": 9.0,
        "tRNA_genes": 70.0,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Anaerostipes",
        "caccae",
        "L1-92"
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}