{
    "type": "genome",
    "identifier": "GCF_000154405.1",
    "organism": "Parvimonas micra ATCC 33270",
    "title": "Parvimonas micra ATCC 33270",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Washington University Genome Sequencing Center",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000154405.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN00627099",
        "wgs_master": "ABEE00000000.2",
        "refseq_category": "na",
        "taxid": "411465",
        "species_taxid": "33033",
        "organism_name": "Parvimonas micra ATCC 33270",
        "infraspecific_name": "strain=ATCC 33270",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2007/09/12",
        "asm_name": "ASM15440v1",
        "asm_submitter": "Washington University Genome Sequencing Center",
        "gbrs_paired_asm": "GCA_000154405.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/154/405/GCF_000154405.1_ASM15440v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "1703872",
        "genome_size_ungapped": "1703772",
        "gc_percent": "28.500000",
        "replicon_count": "0",
        "scaffold_count": "16",
        "contig_count": "17",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2024-01-22",
        "total_gene_count": "1651",
        "protein_coding_gene_count": "1592",
        "non_coding_gene_count": "46",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2007-09-12",
    "dateModified": "2007-09-12",
    "datePublished": "2007-09-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Parvimonas micra ATCC 33270"
        ],
        "sample_taxid": [
            "411465"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not determined"
        ],
        "sample_host_location_id": [],
        "data_size": "0.458 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "1703872",
        "Number of Sequences": "16",
        "Longest Sequences (bp)": "725933",
        "N50 (bp)": "505805",
        "Gap Ratio (%)": "0.005869",
        "GCcontent (%)": "28.7",
        "Number of CDSs": "1601",
        "Average Protein Length": "313.9",
        "Coding Ratio (%)": "88.5",
        "Number of rRNAs": "3",
        "Number of tRNAs": "39",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Parvimonas micra",
                "strain": "strain=ATCC 33270",
                "accession": "GCA_000154405.1",
                "taxid": 33033,
                "species_taxid": 33033,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 558,
                "total_fragments": 559,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Parvimonas micra",
                "strain": "strain=NCTC11808",
                "accession": "GCA_900637905.1",
                "taxid": 33033,
                "species_taxid": 33033,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9983,
                "matched_fragments": 551,
                "total_fragments": 559,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Parvimonas parva",
                "strain": "strain=S3374",
                "accession": "GCA_016552165.1",
                "taxid": 2769485,
                "species_taxid": 2769485,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.6043,
                "matched_fragments": 364,
                "total_fragments": 559,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900637905.1",
                "gtdb_species": "s__Parvimonas micra",
                "ani": 99.9983,
                "matched_fragments": 551,
                "total_fragments": 559,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Parvimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.21",
                "min_intra_species_ani": "97.17",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.77",
                "num_clustered_genomes": 11,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000214475.1",
                "gtdb_species": "s__Parvimonas sp000214475",
                "ani": 91.6936,
                "matched_fragments": 454,
                "total_fragments": 559,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Parvimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.82",
                "min_intra_species_ani": "97.68",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000223315.1",
                "gtdb_species": "s__Parvimonas sp000223315",
                "ani": 91.126,
                "matched_fragments": 432,
                "total_fragments": 559,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Parvimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_015257355.1",
                "gtdb_species": "s__Parvimonas sp015257355",
                "ani": 86.3022,
                "matched_fragments": 304,
                "total_fragments": 559,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Parvimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001553085.1",
                "gtdb_species": "s__Parvimonas sp001553085",
                "ani": 85.3723,
                "matched_fragments": 370,
                "total_fragments": 559,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Parvimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.94",
                "min_intra_species_ani": "97.94",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_001552895.1",
                "gtdb_species": "s__Parvimonas sp001552895",
                "ani": 79.6883,
                "matched_fragments": 245,
                "total_fragments": 559,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Parvimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.0,
        "optimum_ph": null,
        "genome_size": 1647684.0,
        "gc_content": 28.678,
        "coding_genes": 1446.25,
        "rRNA16S_genes": 3.0,
        "tRNA_genes": 41.0,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 0.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Parvimonas",
        "micra",
        "ATCC",
        "33270"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}