<?xml version="1.0" ?>
<BioSampleSet><BioSample submission_date="2008-04-04T08:44:24.950" last_update="2022-09-25T02:00:02.729" publication_date="2008-04-04T00:00:00.000" access="public" id="2" accession="SAMN00000002">   <Ids>     <Id db="BioSample" is_primary="1">SAMN00000002</Id>     <Id db="WUGSC" db_label="Sample name">19655</Id>     <Id db="SRA">SRS000002</Id>   </Ids>   <Description>     <Title>Alistipes putredinis DSM 17216</Title>     <Organism taxonomy_id="445970" taxonomy_name="Alistipes putredinis DSM 17216"/>     <Comment>       <Paragraph>Alistipes putredinis (GenBank Accession Number for 16S rDNA gene: L16497) is a member of the Bacteroidetes division of the domain bacteria and has been isolated from human feces. It has been found in 16S rDNA sequence-based enumerations of the colonic microbiota of adult humans (Eckburg et. al. (2005), Ley et. al. (2006)). </Paragraph>       <Paragraph>Keywords: GSC:MIxS;MIGS:6.0</Paragraph>     </Comment>   </Description>   <Owner>     <Name abbreviation="WUGSC">Washington University, Genome Sequencing Center</Name>     <Contacts>       <Contact/>     </Contacts>   </Owner>   <Models>     <Model>MIGS.ba</Model>   </Models>   <Package display_name="MIGS: cultured bacteria/archaea; version 6.0">MIGS.ba.6.0</Package>   <Attributes>     <Attribute attribute_name="finishing strategy (depth of coverage)">Level 3: Improved-High-Quality Draft11.6x;20</Attribute>     <Attribute attribute_name="collection date" harmonized_name="collection_date" display_name="collection date">not determined</Attribute>     <Attribute attribute_name="estimated_size" harmonized_name="estimated_size" display_name="estimated size">2550000</Attribute>     <Attribute attribute_name="sop">http://hmpdacc.org/doc/CommonGeneAnnotation_SOP.pdf</Attribute>     <Attribute attribute_name="project_type">Reference Genome</Attribute>     <Attribute attribute_name="host" harmonized_name="host" display_name="host">Homo sapiens</Attribute>     <Attribute attribute_name="lat_lon" harmonized_name="lat_lon" display_name="latitude and longitude">not determined</Attribute>     <Attribute attribute_name="biome" harmonized_name="env_broad_scale" display_name="broad-scale environmental context">terrestrial biome [ENVO:00000446]</Attribute>     <Attribute attribute_name="misc_param: HMP body site">not determined</Attribute>     <Attribute attribute_name="nucleic acid extraction">not determined</Attribute>     <Attribute attribute_name="feature" harmonized_name="env_local_scale" display_name="local-scale environmental context">human-associated habitat [ENVO:00009003]</Attribute>     <Attribute attribute_name="investigation_type" harmonized_name="investigation_type" display_name="investigation type">missing</Attribute>     <Attribute attribute_name="host taxid" harmonized_name="host_taxid" display_name="host taxonomy ID">9606</Attribute>     <Attribute attribute_name="project_name" harmonized_name="project_name" display_name="project name">Alistipes putredinis DSM 17216</Attribute>     <Attribute attribute_name="assembly">PCAP</Attribute>     <Attribute attribute_name="geo_loc_name" harmonized_name="geo_loc_name" display_name="geographic location">not determined</Attribute>     <Attribute attribute_name="source_mat_id" harmonized_name="source_material_id" display_name="source material identifiers">DSM 17216, CCUG 45780, CIP 104286, ATCC 29800, Carlier 10203, VPI 3293</Attribute>     <Attribute attribute_name="material" harmonized_name="env_medium" display_name="environmental medium">biological product [ENVO:02000043]</Attribute>     <Attribute attribute_name="ref_biomaterial" harmonized_name="ref_biomaterial" display_name="reference for biomaterial">not determined</Attribute>     <Attribute attribute_name="misc_param: HMP supersite">gastrointestinal_tract</Attribute>     <Attribute attribute_name="num_replicons" harmonized_name="num_replicons" display_name="number of replicons">not determined</Attribute>     <Attribute attribute_name="sequencing method">454-GS20, Sanger</Attribute>     <Attribute attribute_name="isol_growth_condt" harmonized_name="isol_growth_condt" display_name="isolation and growth condition">not determined</Attribute>     <Attribute attribute_name="env_package" harmonized_name="env_package" display_name="environmental package">missing</Attribute>     <Attribute attribute_name="strain" harmonized_name="strain" display_name="strain">DSM 17216</Attribute>     <Attribute attribute_name="isolation-source" harmonized_name="isolation_source" display_name="isolation source">missing</Attribute>     <Attribute attribute_name="type-material">type strain of Bacteroides putredinis</Attribute>   </Attributes>   <Links>     <Link type="url" label="DNA Source">http://www.dsmz.de/catalogues/details/culture/DSM-17216</Link>     <Link type="entrez" target="bioproject">19655</Link>   </Links>   <Status status="live" when="2013-08-05T10:18:49"/> </BioSample> </BioSampleSet>
