{ "type": "genome", "identifier": "GCF_000154465.1", "organism": "Alistipes putredinis DSM 17216", "title": "Alistipes putredinis DSM 17216", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Washington University Genome Sequencing Center", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000154465.1", "bioproject": "PRJNA224116", "biosample": "SAMN00000002", "wgs_master": "ABFK00000000.2", "refseq_category": "reference genome", "taxid": "445970", "species_taxid": "28117", "organism_name": "Alistipes putredinis DSM 17216", "infraspecific_name": "strain=DSM 17216", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2007/11/01", "asm_name": "ASM15446v1", "asm_submitter": "Washington University Genome Sequencing Center", "gbrs_paired_asm": "GCA_000154465.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/154/465/GCF_000154465.1_ASM15446v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2550678", "genome_size_ungapped": "2549878", "gc_percent": "53.500000", "replicon_count": "0", "scaffold_count": "12", "contig_count": "20", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000154465.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "2341", "protein_coding_gene_count": "2240", "non_coding_gene_count": "61", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2007-11-01", "dateModified": "2007-11-01", "datePublished": "2007-11-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Alistipes putredinis DSM 17216" ], "sample_taxid": [ "445970" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not determined" ], "sample_host_location_id": [], "data_size": "0.722 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2550678", "Number of Sequences": "12", "Longest Sequences (bp)": "1197641", "N50 (bp)": "626692", "Gap Ratio (%)": "0.031364", "GCcontent (%)": "53.3", "Number of CDSs": "2284", "Average Protein Length": "314.3", "Coding Ratio (%)": "84.4", "Number of rRNAs": "7", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Alistipes putredinis", "strain": "strain=DSM 17216", "accession": "GCA_000154465.1", "taxid": 28117, "species_taxid": 28117, 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{ "organism_name": "Alistipes communis", "strain": "strain=5CBH24", "accession": "GCA_006542665.1", "taxid": 2585118, "species_taxid": 2585118, "relation_to_type": "type", "validated": true, "ani": 79.1272, "matched_fragments": 268, "total_fragments": 843, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alistipes provencensis", "strain": "strain=Marseille-P2431", "accession": "GCA_900083545.1", "taxid": 1816676, "species_taxid": 1816676, "relation_to_type": "type", "validated": true, "ani": 79.1097, "matched_fragments": 304, "total_fragments": 843, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alistipes timonensis", "strain": "strain=DSM 25383", "accession": "GCA_900107675.1", "taxid": 1465754, "species_taxid": 1465754, "relation_to_type": "type", "validated": true, "ani": 79.0508, "matched_fragments": 290, "total_fragments": 843, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alistipes montrealensis", "strain": 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