{ "type": "genome", "identifier": "GCF_000154985.1", "organism": "Streptococcus infantarius subsp. infantarius ATCC BAA-102", "title": "Streptococcus infantarius subsp. infantarius ATCC BAA-102", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Washington University Genome Sequencing Center", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000154985.1", "bioproject": "PRJNA224116", "biosample": "SAMN00000017", "wgs_master": "ABJK00000000.2", "refseq_category": "na", "taxid": "471872", "species_taxid": "102684", "organism_name": "Streptococcus infantarius subsp. infantarius ATCC BAA-102", "infraspecific_name": "strain=ATCC BAA-102", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2008/03/18", "asm_name": "ASM15498v1", "asm_submitter": "Washington University Genome Sequencing Center", "gbrs_paired_asm": "GCA_000154985.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/154/985/GCF_000154985.1_ASM15498v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "1925187", "genome_size_ungapped": "1925087", "gc_percent": "37.500000", "replicon_count": "0", "scaffold_count": "21", "contig_count": "22", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-02-09", "total_gene_count": "2001", "protein_coding_gene_count": "1818", "non_coding_gene_count": "63", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2008-03-18", "dateModified": "2008-03-18", "datePublished": "2008-03-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptococcus infantarius subsp. infantarius ATCC BAA-102" ], "sample_taxid": [ "471872" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not determined" ], "sample_host_location_id": [], "data_size": "0.542 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "1925187", "Number of Sequences": "21", "Longest Sequences (bp)": "424586", "N50 (bp)": "144901", "Gap Ratio (%)": "0.005194", "GCcontent (%)": "37.6", "Number of CDSs": "1956", "Average Protein Length": "284.5", "Coding Ratio (%)": "86.7", "Number of rRNAs": "8", "Number of tRNAs": "49", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptococcus infantarius subsp. infantarius", "strain": "strain=ATCC BAA-102", "accession": "GCA_000154985.1", "taxid": 150054, "species_taxid": 102684, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 630, "total_fragments": 631, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptococcus infantarius", "strain": "strain=FDAARGOS_1019", "accession": "GCA_016127275.1", "taxid": 102684, "species_taxid": 102684, "relation_to_type": "type", "validated": true, "ani": 99.9872, "matched_fragments": 630, "total_fragments": 631, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptococcus infantarius", "strain": "strain=NCTC13760", "accession": "GCA_900459445.1", "taxid": 102684, "species_taxid": 102684, "relation_to_type": "type", "validated": true, "ani": 99.987, "matched_fragments": 629, "total_fragments": 631, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptococcus lutetiensis", "strain": "strain=NCTC13774", "accession": "GCA_900475675.1", "taxid": 150055, "species_taxid": 150055, "relation_to_type": "type", "validated": true, "ani": 94.1781, "matched_fragments": 510, "total_fragments": 631, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus lutetiensis", "strain": "strain=FDAARGOS_1158", "accession": "GCA_016725165.1", "taxid": 150055, "species_taxid": 150055, "relation_to_type": "type", "validated": true, "ani": 94.1747, "matched_fragments": 504, "total_fragments": 631, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus lutetiensis", "strain": "strain=FDAARGOS_1018", "accession": "GCA_016403165.1", "taxid": 150055, "species_taxid": 150055, "relation_to_type": "type", "validated": true, "ani": 93.881, "matched_fragments": 511, "total_fragments": 631, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus vicugnae", "strain": "strain=SL1232", "accession": "GCA_016461705.1", "taxid": 2740579, "species_taxid": 2740579, 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"validated": true, "ani": 79.2016, "matched_fragments": 72, "total_fragments": 631, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000154985.1", "gtdb_species": "s__Streptococcus infantarius", "ani": 100.0, "matched_fragments": 629, "total_fragments": 631, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.67", "min_intra_species_ani": "95.30", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.82", "num_clustered_genomes": 24, "status": "conclusive" }, { "accession": "GCF_900101445.1", "gtdb_species": "s__Streptococcus equinus_B", "ani": 94.281, "matched_fragments": 519, "total_fragments": 631, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", 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"mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016461705.1", "gtdb_species": "s__Streptococcus vicugnae", "ani": 90.2277, "matched_fragments": 521, "total_fragments": 631, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.43", "min_intra_species_ani": "98.30", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.90", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_000283635.1", "gtdb_species": "s__Streptococcus macedonicus", "ani": 86.0488, "matched_fragments": 473, "total_fragments": 631, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 96.3165, "mean_intra_species_ani": "99.04", "min_intra_species_ani": "98.50", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.83", "num_clustered_genomes": 11, "status": "-" }, { "accession": "GCF_002000985.1", "gtdb_species": "s__Streptococcus gallolyticus", "ani": 85.0109, "matched_fragments": 467, "total_fragments": 631, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 96.3165, "mean_intra_species_ani": "98.04", "min_intra_species_ani": "96.86", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.79", "num_clustered_genomes": 22, "status": "-" }, { "accession": "GCA_900478025.1", "gtdb_species": "s__Streptococcus pasteurianus", "ani": 84.6746, "matched_fragments": 448, "total_fragments": 631, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 96.1304, "mean_intra_species_ani": "99.06", "min_intra_species_ani": "98.58", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.84", "num_clustered_genomes": 22, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.157, "cell_length": -0.167, "doubling_h": -0.216, "growth_tmp": 36.0, "optimum_tmp": 35.667, "optimum_ph": 6.89, "genome_size": 1931069.667, "gc_content": 36.959, "coding_genes": 1757.667, "rRNA16S_genes": 7.5, "tRNA_genes": 75.0, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": 0.285, "facultative_respiration": 1.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 1.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Streptococcus", "infantarius", "subsp.", "infantarius", "ATCC", "BAA-102" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }