{ "tc_result": [ { "organism_name": "[Ruminococcus] lactaris", "strain": "strain=ATCC 29176", "accession": "GCA_000155205.1", "taxid": 46228, "species_taxid": 46228, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 885, "total_fragments": 887, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "[Ruminococcus] lactaris", "strain": "strain=ATCC 29176", "accession": "GCA_025152405.1", "taxid": 46228, "species_taxid": 46228, "relation_to_type": "type", "validated": true, "ani": 99.9668, "matched_fragments": 878, "total_fragments": 887, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Mediterraneibacter butyricigenes", "strain": "strain=KCTC 15684", "accession": "GCA_003574295.1", "taxid": 2316025, "species_taxid": 2316025, "relation_to_type": "type", "validated": true, "ani": 80.2693, "matched_fragments": 197, "total_fragments": 887, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Ruminococcus] gnavus", "strain": "strain=JCM6515", "accession": "GCA_008121495.1", "taxid": 33038, "species_taxid": 33038, "relation_to_type": "suspected-type", "validated": true, "ani": 79.1936, "matched_fragments": 237, "total_fragments": 887, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseburia faecis", "strain": "strain=M72", "accession": "GCA_001406815.1", "taxid": 301302, "species_taxid": 301302, "relation_to_type": "type", "validated": true, "ani": 79.128, "matched_fragments": 98, "total_fragments": 887, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Ruminococcus] torques", "strain": "strain=ATCC 27756", "accession": "GCA_000153925.1", "taxid": 33039, "species_taxid": 33039, "relation_to_type": "type", "validated": true, "ani": 79.0326, "matched_fragments": 173, "total_fragments": 887, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Ruminococcus] gnavus", "strain": "strain=ATCC 29149", "accession": "GCA_002959615.1", "taxid": 33038, "species_taxid": 33038, "relation_to_type": "suspected-type", "validated": true, "ani": 78.9937, "matched_fragments": 236, "total_fragments": 887, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Ruminococcus] gnavus", "strain": "strain=ATCC 29149", "accession": "GCA_000169475.1", "taxid": 33038, "species_taxid": 33038, "relation_to_type": "suspected-type", "validated": true, "ani": 78.9186, "matched_fragments": 236, "total_fragments": 887, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mediterraneibacter massiliensis", "strain": "strain=Marseille-P2086", "accession": "GCA_001487105.1", "taxid": 1720300, "species_taxid": 1720300, "relation_to_type": "type", "validated": true, "ani": 78.6288, "matched_fragments": 154, "total_fragments": 887, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mediterraneibacter catenae", "strain": "strain=SW178", "accession": "GCA_008691045.1", "taxid": 2594882, "species_taxid": 2594882, "relation_to_type": "type", "validated": true, "ani": 78.4515, "matched_fragments": 172, "total_fragments": 887, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Faecalicatena faecalis", "strain": "strain=AGMB00832", "accession": "GCA_012524165.2", "taxid": 2726362, "species_taxid": 2726362, "relation_to_type": "type", "validated": true, "ani": 78.4163, "matched_fragments": 163, "total_fragments": 887, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jingyaoa shaoxingensis", "strain": "strain=NSJ-46", "accession": "GCA_014385005.1", "taxid": 2763671, "species_taxid": 2763671, "relation_to_type": "type", "validated": true, "ani": 78.3492, "matched_fragments": 118, "total_fragments": 887, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000155205.1", "gtdb_species": "s__Mediterraneibacter lactaris", "ani": 100.0, "matched_fragments": 885, "total_fragments": 887, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Mediterraneibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.88", "min_intra_species_ani": "98.36", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.80", "num_clustered_genomes": 12, "status": "conclusive" }, { "accession": "GCA_001312505.1", "gtdb_species": "s__Mediterraneibacter faecis", "ani": 80.8238, "matched_fragments": 334, "total_fragments": 887, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Mediterraneibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.72", "min_intra_species_ani": "95.03", "mean_intra_species_af": "0.76", "min_intra_species_af": "0.67", "num_clustered_genomes": 61, "status": "-" }, { "accession": "GCF_003574295.1", "gtdb_species": "s__Mediterraneibacter_A butyricigenes", "ani": 80.3468, "matched_fragments": 194, "total_fragments": 887, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Mediterraneibacter_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.15", "min_intra_species_ani": "98.07", "mean_intra_species_af": "0.82", "min_intra_species_af": "0.80", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_001404875.1", "gtdb_species": "s__Dorea_A longicatena_B", "ani": 79.917, "matched_fragments": 190, "total_fragments": 887, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Dorea_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.75", "min_intra_species_ani": "96.72", "mean_intra_species_af": "0.80", "min_intra_species_af": "0.69", "num_clustered_genomes": 20, "status": "-" }, { "accession": "GCA_003480425.1", "gtdb_species": "s__Schaedlerella sp900066545", 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"total_fragments": 887, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__CAG-317", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.71", "min_intra_species_ani": "98.41", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.86", "num_clustered_genomes": 9, "status": "-" }, { "accession": "GCF_002159505.1", "gtdb_species": "s__Mediterraneibacter ornithocaccae", "ani": 78.596, "matched_fragments": 175, "total_fragments": 887, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Mediterraneibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.93", "min_intra_species_ani": "97.52", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.82", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_004556565.1", "gtdb_species": "s__Schaedlerella sp004556565", "ani": 78.4512, "matched_fragments": 137, "total_fragments": 887, 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"d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Mediterraneibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }