{
    "type": "genome",
    "identifier": "GCF_000155205.1",
    "organism": "[Ruminococcus] lactaris ATCC 29176",
    "title": "[Ruminococcus] lactaris ATCC 29176",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Washington University Genome Sequencing Center",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000155205.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN00000022",
        "wgs_master": "ABOU00000000.2",
        "refseq_category": "na",
        "taxid": "471875",
        "species_taxid": "46228",
        "organism_name": "[Ruminococcus] lactaris ATCC 29176",
        "infraspecific_name": "strain=ATCC 29176",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2008/08/28",
        "asm_name": "ASM15520v1",
        "asm_submitter": "Washington University Genome Sequencing Center",
        "gbrs_paired_asm": "GCA_000155205.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/155/205/GCF_000155205.1_ASM15520v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2731235",
        "genome_size_ungapped": "2729735",
        "gc_percent": "42.500000",
        "replicon_count": "0",
        "scaffold_count": "47",
        "contig_count": "62",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2024-02-28",
        "total_gene_count": "2586",
        "protein_coding_gene_count": "2433",
        "non_coding_gene_count": "71",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2008-08-28",
    "dateModified": "2008-08-28",
    "datePublished": "2008-08-28",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "[Ruminococcus] lactaris ATCC 29176"
        ],
        "sample_taxid": [
            "471875"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not determined"
        ],
        "sample_host_location_id": [],
        "data_size": "0.766 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2731235",
        "Number of Sequences": "47",
        "Longest Sequences (bp)": "292802",
        "N50 (bp)": "91712",
        "Gap Ratio (%)": "0.054920",
        "GCcontent (%)": "42.7",
        "Number of CDSs": "2520",
        "Average Protein Length": "312.3",
        "Coding Ratio (%)": "86.5",
        "Number of rRNAs": "10",
        "Number of tRNAs": "55",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "[Ruminococcus] lactaris",
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                "species_taxid": 46228,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 885,
                "total_fragments": 887,
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                "status": "conclusive"
            },
            {
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                "status": "conclusive"
            },
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                "organism_name": "Mediterraneibacter butyricigenes",
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                "species_taxid": 2316025,
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            {
                "organism_name": "[Ruminococcus] gnavus",
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                "ani_threshold": 95,
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            {
                "organism_name": "Roseburia faecis",
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                "ani": 79.128,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "[Ruminococcus] torques",
                "strain": "strain=ATCC 27756",
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                "species_taxid": 33039,
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                "ani": 79.0326,
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            },
            {
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                "accession": "GCA_002959615.1",
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                "ani_threshold": 95,
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            },
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                "species_taxid": 1720300,
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                "status": "below_threshold"
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                "status": "below_threshold"
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                "organism_name": "Jingyaoa shaoxingensis",
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                "total_fragments": 887,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Mediterraneibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.73",
                "min_intra_species_ani": "98.73",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_019119675.1",
                "gtdb_species": "s__Mediterraneibacter faecipullorum",
                "ani": 77.301,
                "matched_fragments": 182,
                "total_fragments": 887,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Mediterraneibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "[Ruminococcus]",
        "lactaris",
        "ATCC",
        "29176"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}