{ "type": "genome", "identifier": "GCF_000155675.2", "organism": "Octadecabacter antarcticus 307", "title": "Octadecabacter antarcticus 307", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Moore Foundation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000155675.2", "bioproject": "PRJNA224116", "biosample": "SAMN02603621", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "391626", "species_taxid": "1217908", "organism_name": "Octadecabacter antarcticus 307", "infraspecific_name": "strain=307", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/04/08", "asm_name": "ASM15567v2", "asm_submitter": "Moore Foundation", "gbrs_paired_asm": "GCA_000155675.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/155/675/GCF_000155675.2_ASM15567v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4875481", "genome_size_ungapped": "4875481", "gc_percent": "54.500000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000155675.2-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "5091", "protein_coding_gene_count": "4527", "non_coding_gene_count": "54", "pubmed_id": "23671678" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-04-08", "dateModified": "2013-04-08", "datePublished": "2013-04-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Octadecabacter antarcticus 307" ], "sample_taxid": [ "391626" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Antarctica: McMurdo Sound" ], "sample_host_location_id": [], "data_size": "1.378 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4875481", "Number of Sequences": "2", "Longest Sequences (bp)": "4812600", "N50 (bp)": "4812600", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "54.6", "Number of CDSs": "5214", "Average Protein Length": "262.9", "Coding Ratio (%)": "84.3", "Number of rRNAs": "6", "Number of tRNAs": "43", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Octadecabacter antarcticus", "strain": "strain=307", "accession": "GCA_000155675.2", "taxid": 1217908, "species_taxid": 1217908, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1623, "total_fragments": 1624, 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"vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Octadecabacter", "antarcticus", "307" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }