{ "type": "genome", "identifier": "GCF_000155735.2", "organism": "Octadecabacter arcticus 238", "title": "Octadecabacter arcticus 238", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Moore Foundation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000155735.2", "bioproject": "PRJNA224116", "biosample": "SAMN02603620", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "391616", "species_taxid": "53946", "organism_name": "Octadecabacter arcticus 238", "infraspecific_name": "strain=238", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/04/08", "asm_name": "ASM15573v2", "asm_submitter": "Moore Foundation", "gbrs_paired_asm": "GCA_000155735.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/155/735/GCF_000155735.2_ASM15573v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5478249", "genome_size_ungapped": "5478249", "gc_percent": "55.000000", "replicon_count": "3", "scaffold_count": "3", "contig_count": "3", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000155735.2-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "5695", "protein_coding_gene_count": "5038", "non_coding_gene_count": "52", "pubmed_id": "23671678" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-04-08", "dateModified": "2013-04-08", "datePublished": "2013-04-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Octadecabacter arcticus 238" ], "sample_taxid": [ "391616" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Deadhorse, Alaska" ], "sample_host_location_id": [], "data_size": "1.530 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5478249", "Number of Sequences": "3", "Longest Sequences (bp)": "5200279", "N50 (bp)": "5200279", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "55.1", "Number of CDSs": "5923", "Average Protein Length": "263.5", "Coding Ratio (%)": "85.5", "Number of rRNAs": "6", "Number of tRNAs": "42", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Octadecabacter arcticus", "strain": "strain=238", "accession": "GCA_000155735.2", "taxid": 53946, "species_taxid": 53946, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1824, "total_fragments": 1825, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Octadecabacter antarcticus", "strain": "strain=307", "accession": "GCA_000155675.2", "taxid": 1217908, "species_taxid": 1217908, "relation_to_type": "type", "validated": true, "ani": 84.2702, "matched_fragments": 963, "total_fragments": 1825, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Octadecabacter temperatus", "strain": "strain=DSM 26878", "accession": "GCA_900142425.1", "taxid": 1458307, "species_taxid": 1458307, "relation_to_type": "type", "validated": true, "ani": 78.4325, "matched_fragments": 453, "total_fragments": 1825, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Octadecabacter ascidiaceicola", "strain": "strain=CECT 8868", "accession": "GCA_900185015.1", "taxid": 1655543, "species_taxid": 1655543, "relation_to_type": "type", "validated": true, "ani": 78.404, "matched_fragments": 475, "total_fragments": 1825, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Octadecabacter temperatus", "strain": "strain=SB1", "accession": "GCA_001187845.1", "taxid": 1458307, "species_taxid": 1458307, "relation_to_type": "type", "validated": true, "ani": 78.4005, "matched_fragments": 452, "total_fragments": 1825, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassorhabdomicrobium marinisediminis", "strain": "strain=BH-SD16", "accession": "GCA_003072065.1", "taxid": 2170577, "species_taxid": 2170577, "relation_to_type": "type", "validated": true, "ani": 77.1188, "matched_fragments": 316, "total_fragments": 1825, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cognatiyoonia koreensis", "strain": "strain=DSM 17925", "accession": "GCA_900109295.1", "taxid": 364200, "species_taxid": 364200, "relation_to_type": "type", "validated": true, "ani": 77.0888, "matched_fragments": 135, "total_fragments": 1825, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yoonia maritima", "strain": "strain=DSM 101533", "accession": "GCA_003003285.1", "taxid": 1435347, "species_taxid": 1435347, "relation_to_type": "type", "validated": true, "ani": 76.9068, "matched_fragments": 133, "total_fragments": 1825, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagivirga sediminicola", "strain": "strain=BH-SD19", "accession": "GCA_003072125.1", "taxid": 2170575, "species_taxid": 2170575, "relation_to_type": "type", "validated": true, "ani": 76.7754, "matched_fragments": 138, "total_fragments": 1825, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yoonia litorea", "strain": "strain=DSM 29433", "accession": "GCA_900114675.1", "taxid": 1123755, "species_taxid": 1123755, "relation_to_type": "type", "validated": true, "ani": 76.5936, "matched_fragments": 125, "total_fragments": 1825, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoprimorskyibacter insulae", "strain": "strain=CECT 8871", "accession": "GCA_900302505.1", "taxid": 1695997, "species_taxid": 1695997, "relation_to_type": "type", "validated": true, "ani": 76.3575, "matched_fragments": 160, "total_fragments": 1825, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tabrizicola algicola", "strain": "strain=ETT8", "accession": "GCA_010915705.1", "taxid": 2709381, "species_taxid": 2709381, "relation_to_type": "type", "validated": true, "ani": 76.2879, "matched_fragments": 117, "total_fragments": 1825, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cochlodiniinecator piscidefendens", "strain": "strain=M26A2M", "accession": "GCA_011326755.1", "taxid": 2715756, "species_taxid": 2715756, "relation_to_type": "type", "validated": true, "ani": 76.0762, "matched_fragments": 95, "total_fragments": 1825, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, 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1.0, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Octadecabacter", "arcticus", "238" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }