{
    "type": "genome",
    "identifier": "GCF_000155955.1",
    "organism": "Mitsuokella multacida DSM 20544",
    "title": "Mitsuokella multacida DSM 20544",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Washington University Genome Sequencing Center",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000155955.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN00000736",
        "wgs_master": "ABWK00000000.2",
        "refseq_category": "reference genome",
        "taxid": "500635",
        "species_taxid": "52226",
        "organism_name": "Mitsuokella multacida DSM 20544",
        "infraspecific_name": "strain=DSM 20544",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2009/07/22",
        "asm_name": "ASM15595v1",
        "asm_submitter": "Washington University Genome Sequencing Center",
        "gbrs_paired_asm": "GCA_000155955.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/155/955/GCF_000155955.1_ASM15595v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from synonym type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2577056",
        "genome_size_ungapped": "2574556",
        "gc_percent": "58.000000",
        "replicon_count": "0",
        "scaffold_count": "6",
        "contig_count": "31",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000155955.1-RS_2024_04_07",
        "annotation_date": "2024-04-07",
        "total_gene_count": "2423",
        "protein_coding_gene_count": "2318",
        "non_coding_gene_count": "92",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2009-07-22",
    "dateModified": "2009-07-22",
    "datePublished": "2009-07-22",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Mitsuokella multacida DSM 20544"
        ],
        "sample_taxid": [
            "500635"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not determined"
        ],
        "sample_host_location_id": [],
        "data_size": "0.716 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2577056",
        "Number of Sequences": "6",
        "Longest Sequences (bp)": "1483428",
        "N50 (bp)": "1483428",
        "Gap Ratio (%)": "0.097010",
        "GCcontent (%)": "58.1",
        "Number of CDSs": "2378",
        "Average Protein Length": "320.4",
        "Coding Ratio (%)": "88.7",
        "Number of rRNAs": "11",
        "Number of tRNAs": "76",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Mitsuokella multacida",
                "strain": "strain=DSM 20544",
                "accession": "GCA_000155955.1",
                "taxid": 52226,
                "species_taxid": 52226,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 856,
                "total_fragments": 856,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Mitsuokella jalaludinii",
                "strain": "strain=DSM 13811",
                "accession": "GCA_000702905.1",
                "taxid": 187979,
                "species_taxid": 187979,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.3672,
                "matched_fragments": 664,
                "total_fragments": 856,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Selenomonas montiformis",
                "strain": "strain=WCA-380-WT-3B3",
                "accession": "GCA_009697385.1",
                "taxid": 2652285,
                "species_taxid": 2652285,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.2853,
                "matched_fragments": 207,
                "total_fragments": 856,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Selenomonas sputigena",
                "strain": "strain=ATCC 35185",
                "accession": "GCA_000208405.1",
                "taxid": 69823,
                "species_taxid": 69823,
                "relation_to_type": "neotype",
                "validated": true,
                "ani": 78.6012,
                "matched_fragments": 239,
                "total_fragments": 856,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Selenomonas sputigena",
                "strain": "strain=ATCC 35185",
                "accession": "GCA_000160495.1",
                "taxid": 69823,
                "species_taxid": 69823,
                "relation_to_type": "neotype",
                "validated": true,
                "ani": 78.5375,
                "matched_fragments": 241,
                "total_fragments": 856,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Selenomonas ruminantium subsp. ruminantium",
                "strain": "strain=ATCC 12561",
                "accession": "GCA_000424065.1",
                "taxid": 114196,
                "species_taxid": 971,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3182,
                "matched_fragments": 128,
                "total_fragments": 856,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Selenomonas infelix",
                "strain": "strain=ATCC 43532",
                "accession": "GCA_000234095.1",
                "taxid": 135082,
                "species_taxid": 135082,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8169,
                "matched_fragments": 118,
                "total_fragments": 856,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Selenomonas timonae",
                "strain": "strain=Marseille-Q3039",
                "accession": "GCA_014250475.1",
                "taxid": 2754044,
                "species_taxid": 2754044,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6513,
                "matched_fragments": 181,
                "total_fragments": 856,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Selenomonas felix",
                "strain": "strain=Marseille-P3560",
                "accession": "GCA_900186465.1",
                "taxid": 1944634,
                "species_taxid": 1944634,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6033,
                "matched_fragments": 166,
                "total_fragments": 856,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Selenomonas artemidis",
                "strain": "strain=DSM 19719",
                "accession": "GCA_000426665.1",
                "taxid": 671224,
                "species_taxid": 671224,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2493,
                "matched_fragments": 129,
                "total_fragments": 856,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus pasadenensis",
                "strain": "strain=DSM 19293",
                "accession": "GCA_000422485.1",
                "taxid": 217090,
                "species_taxid": 217090,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2472,
                "matched_fragments": 64,
                "total_fragments": 856,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000155955.1",
                "gtdb_species": "s__Mitsuokella multacida",
                "ani": 100.0,
                "matched_fragments": 856,
                "total_fragments": 856,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Mitsuokella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.52",
                "min_intra_species_ani": "96.22",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 5,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000702905.1",
                "gtdb_species": "s__Mitsuokella jalaludinii",
                "ani": 90.3492,
                "matched_fragments": 665,
                "total_fragments": 856,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Mitsuokella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.12",
                "min_intra_species_ani": "97.46",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 11,
                "status": "-"
            },
            {
                "accession": "GCA_902364065.1",
                "gtdb_species": "s__Mitsuokella sp003458855",
                "ani": 84.1088,
                "matched_fragments": 546,
                "total_fragments": 856,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Mitsuokella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.62",
                "min_intra_species_ani": "95.79",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.62",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCA_900552565.1",
                "gtdb_species": "s__Mitsuokella sp900552565",
                "ani": 83.8196,
                "matched_fragments": 461,
                "total_fragments": 856,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Mitsuokella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.02",
                "min_intra_species_ani": "98.08",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_900318215.1",
                "gtdb_species": "s__Selenomonas_C sp900318215",
                "ani": 80.9589,
                "matched_fragments": 321,
                "total_fragments": 856,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Selenomonas_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.35",
                "min_intra_species_ani": "97.85",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.79",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCA_900315575.1",
                "gtdb_species": "s__Selenomonas_C sp900315575",
                "ani": 80.7008,
                "matched_fragments": 372,
                "total_fragments": 856,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Selenomonas_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.35",
                "min_intra_species_ani": "97.63",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.78",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_000469545.1",
                "gtdb_species": "s__Mitsuokella sp000469545",
                "ani": 79.1606,
                "matched_fragments": 286,
                "total_fragments": 856,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Mitsuokella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.87",
                "min_intra_species_ani": "98.87",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_900316275.1",
                "gtdb_species": "s__UBA2897 sp900316275",
                "ani": 79.0378,
                "matched_fragments": 301,
                "total_fragments": 856,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__UBA2897",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.98",
                "min_intra_species_ani": "99.98",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.0,
        "optimum_ph": null,
        "genome_size": 2574556.0,
        "gc_content": 58.01,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Mitsuokella",
        "multacida",
        "DSM",
        "20544"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}