{ "type": "genome", "identifier": "GCF_000156535.1", "organism": "Roseburia intestinalis L1-82", "title": "Roseburia intestinalis L1-82", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Washington University Genome Sequencing Center", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000156535.1", "bioproject": "PRJNA224116", "biosample": "SAMN00008856", "wgs_master": "ABYJ00000000.2", "refseq_category": "na", "taxid": "536231", "species_taxid": "166486", "organism_name": "Roseburia intestinalis L1-82", "infraspecific_name": "strain=L1-82", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2009/06/22", "asm_name": "ASM15653v1", "asm_submitter": "Washington University Genome Sequencing Center", "gbrs_paired_asm": "GCA_000156535.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/156/535/GCF_000156535.1_ASM15653v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4411375", "genome_size_ungapped": "4380675", "gc_percent": "42.500000", "replicon_count": "0", "scaffold_count": "102", "contig_count": "409", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-02-28", "total_gene_count": "4324", "protein_coding_gene_count": "3964", "non_coding_gene_count": "75", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2009-06-22", "dateModified": "2009-06-22", "datePublished": "2009-06-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Roseburia intestinalis L1-82" ], "sample_taxid": [ "536231" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not determined" ], "sample_host_location_id": [], "data_size": "1.237 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 91.67, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4411375", "Number of Sequences": "102", "Longest Sequences (bp)": "268977", "N50 (bp)": "123125", "Gap Ratio (%)": "0.695928", "GCcontent (%)": "42.6", "Number of CDSs": "4014", "Average Protein Length": "311.4", "Coding Ratio (%)": "85.0", "Number of rRNAs": "2", "Number of tRNAs": "60", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Roseburia intestinalis", "strain": "strain=L1-82", "accession": "GCA_000156535.1", 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"organism_name": "Roseburia porci", "strain": "strain=MUC/MUC-530-WT-4D", "accession": "GCA_009695765.1", "taxid": 2605790, "species_taxid": 2605790, "relation_to_type": "type", "validated": true, "ani": 78.3639, "matched_fragments": 212, "total_fragments": 1424, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blautia intestinalis", "strain": "strain=27-44", "accession": "GCA_014297355.1", "taxid": 2763028, "species_taxid": 2763028, "relation_to_type": "type", "validated": true, "ani": 78.3557, "matched_fragments": 109, "total_fragments": 1424, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marvinbryantia formatexigens", "strain": "strain=DSM 14469", "accession": "GCA_025148285.1", "taxid": 168384, "species_taxid": 168384, "relation_to_type": "type", "validated": true, "ani": 77.332, "matched_fragments": 68, "total_fragments": 1424, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marvinbryantia formatexigens", 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