{ "type": "genome", "identifier": "GCF_000157895.3", "organism": "Mycobacterium kansasii ATCC 12478", "title": "Mycobacterium kansasii ATCC 12478", "description": "na", "data type": "Genome sequencing and assembly", "organization": "McGill University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000157895.3", "bioproject": "PRJNA224116", "biosample": "SAMN02603596", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "557599", "species_taxid": "1768", "organism_name": "Mycobacterium kansasii ATCC 12478", "infraspecific_name": "strain=ATCC 12478", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/11/01", "asm_name": "ASM15789v2", "asm_submitter": "McGill University", "gbrs_paired_asm": "GCA_000157895.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/157/895/GCF_000157895.3_ASM15789v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6577228", "genome_size_ungapped": "6577228", "gc_percent": "66.000000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000157895.3-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "5794", "protein_coding_gene_count": "5488", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-11-01", "dateModified": "2013-11-01", "datePublished": "2013-11-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Mycobacterium kansasii ATCC 12478" ], "sample_taxid": [ "557599" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.804 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6577228", "Number of Sequences": "2", "Longest Sequences (bp)": "6432277", "N50 (bp)": "6432277", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.2", "Number of CDSs": "5835", "Average Protein Length": "335.0", "Coding Ratio (%)": "89.2", "Number of rRNAs": "3", "Number of tRNAs": "56", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mycobacterium kansasii", "strain": "strain=ATCC 12478", "accession": "GCA_000157895.2", "taxid": 1768, "species_taxid": 1768, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2190, "total_fragments": 2192, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Mycobacterium innocens", "strain": "strain=MK13", "accession": "GCA_900566055.1", "taxid": 2341083, "species_taxid": 2341083, "relation_to_type": "type", "validated": true, "ani": 93.3785, "matched_fragments": 1626, "total_fragments": 2192, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium pseudokansasii", "strain": "strain=MK142", "accession": "GCA_900566075.1", "taxid": 2341080, "species_taxid": 2341080, "relation_to_type": "type", "validated": true, "ani": 92.8608, "matched_fragments": 1828, "total_fragments": 2192, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium persicum", "strain": "strain=AFPC-000227", "accession": "GCA_002086675.1", "taxid": 1487726, "species_taxid": 1487726, "relation_to_type": "type", "validated": true, "ani": 92.6279, "matched_fragments": 1749, "total_fragments": 2192, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium ostraviense", "strain": "strain=241/15", "accession": "GCA_002705925.1", "taxid": 2738409, "species_taxid": 2738409, "relation_to_type": "type", "validated": true, "ani": 92.3, "matched_fragments": 1736, "total_fragments": 2192, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium gastri", "strain": "strain=DSM 43505", "accession": "GCA_002102175.1", "taxid": 1777, "species_taxid": 1777, "relation_to_type": "type", "validated": true, "ani": 91.5036, "matched_fragments": 1616, "total_fragments": 2192, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium attenuatum", "strain": "strain=MK41", "accession": "GCA_900566085.1", "taxid": 2341086, "species_taxid": 2341086, "relation_to_type": "type", "validated": true, "ani": 90.3025, "matched_fragments": 1750, "total_fragments": 2192, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium angelicum", "strain": 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