{ "type": "genome", "identifier": "GCF_000157915.1", "organism": "Phocaeicola coprophilus DSM 18228 = JCM 13818", "title": "Phocaeicola coprophilus DSM 18228 = JCM 13818", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Washington University Genome Sequencing Center", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000157915.1", "bioproject": "PRJNA224116", "biosample": "SAMN00008769", "wgs_master": "ACBW00000000.1", "refseq_category": "na", "taxid": "547042", "species_taxid": "387090", "organism_name": "Phocaeicola coprophilus DSM 18228 = JCM 13818", "infraspecific_name": "strain=DSM 18228", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2009/02/09", "asm_name": "ASM15791v1", "asm_submitter": "Washington University Genome Sequencing Center", "gbrs_paired_asm": "GCA_000157915.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/157/915/GCF_000157915.1_ASM15791v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4041504", "genome_size_ungapped": "3855443", "gc_percent": "45.500000", "replicon_count": "0", "scaffold_count": "73", "contig_count": "285", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000157915.1-RS_2024_09_10", "annotation_date": "2024-09-10", "total_gene_count": "3420", "protein_coding_gene_count": "3205", "non_coding_gene_count": "68", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2009-02-09", "dateModified": "2009-02-09", "datePublished": "2009-02-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Phocaeicola coprophilus DSM 18228 = JCM 13818" ], "sample_taxid": [ "547042" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not determined" ], "sample_host_location_id": [], "data_size": "1.104 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4041504", "Number of Sequences": "73", "Longest Sequences (bp)": "763583", "N50 (bp)": "361429", "Gap Ratio (%)": "4.603756", "GCcontent (%)": "45.7", "Number of CDSs": "3187", "Average Protein Length": "348.2", "Coding Ratio (%)": "82.4", "Number of rRNAs": "3", "Number of tRNAs": "63", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Phocaeicola coprophilus", "strain": "strain=DSM 18228", "accession": "GCA_000157915.1", "taxid": 387090, 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