{
    "type": "genome",
    "identifier": "GCF_000157955.1",
    "organism": "Subdoligranulum variabile DSM 15176",
    "title": "Subdoligranulum variabile DSM 15176",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Washington University Genome Sequencing Center",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000157955.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN00008862",
        "wgs_master": "ACBY00000000.2",
        "refseq_category": "na",
        "taxid": "411471",
        "species_taxid": "214851",
        "organism_name": "Subdoligranulum variabile DSM 15176",
        "infraspecific_name": "strain=DSM 15176",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2009/10/06",
        "asm_name": "ASM15795v1",
        "asm_submitter": "Washington University Genome Sequencing Center",
        "gbrs_paired_asm": "GCA_000157955.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/157/955/GCF_000157955.1_ASM15795v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3245471",
        "genome_size_ungapped": "3237471",
        "gc_percent": "58.000000",
        "replicon_count": "0",
        "scaffold_count": "11",
        "contig_count": "91",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000157955.1-RS_2024_04_10",
        "annotation_date": "2024-04-10",
        "total_gene_count": "3114",
        "protein_coding_gene_count": "2992",
        "non_coding_gene_count": "68",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2009-10-06",
    "dateModified": "2009-10-06",
    "datePublished": "2009-10-06",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Subdoligranulum variabile DSM 15176"
        ],
        "sample_taxid": [
            "411471"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not determined"
        ],
        "sample_host_location_id": [],
        "data_size": "0.908 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3245471",
        "Number of Sequences": "11",
        "Longest Sequences (bp)": "2385595",
        "N50 (bp)": "2385595",
        "Gap Ratio (%)": "0.246497",
        "GCcontent (%)": "57.9",
        "Number of CDSs": "3009",
        "Average Protein Length": "319.5",
        "Coding Ratio (%)": "88.9",
        "Number of rRNAs": "7",
        "Number of tRNAs": "63",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Subdoligranulum variabile",
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                "accession": "GCA_000157955.1",
                "taxid": 214851,
                "species_taxid": 214851,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1076,
                "total_fragments": 1077,
                "ani_threshold": 95,
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            },
            {
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                "accession": "GCA_025152575.1",
                "taxid": 214851,
                "species_taxid": 214851,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9579,
                "matched_fragments": 1069,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Faecalibacterium duncaniae",
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                "species_taxid": 411483,
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                "matched_fragments": 235,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Faecalibacterium duncaniae",
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                "species_taxid": 411483,
                "relation_to_type": "type",
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                "matched_fragments": 235,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fournierella massiliensis",
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                "accession": "GCA_004345265.1",
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                "species_taxid": 1650663,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 254,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Faecalibacterium gallinarum",
                "strain": "strain=JCM 17207",
                "accession": "GCA_022180365.1",
                "taxid": 2903556,
                "species_taxid": 2903556,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.6535,
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                "total_fragments": 1077,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Faecalibacterium hattorii",
                "strain": "strain=APC922/41-1",
                "accession": "GCA_003287455.1",
                "taxid": 2935520,
                "species_taxid": 2935520,
                "relation_to_type": "type",
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                "matched_fragments": 211,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Faecalibacterium prausnitzii",
                "strain": "strain=ATCC 27768",
                "accession": "GCA_003324185.1",
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                "status": "below_threshold"
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        ],
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            "contamination": 0.0,
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                "accession": "GCF_000157955.1",
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                "status": "-"
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                "accession": "GCA_019116445.1",
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    "_bac2feature": {
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        "bacillus_cell_shape": null,
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        "vibrio_cell_shape": null,
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    },
    "_genome_taxon": [
        "Subdoligranulum",
        "variabile",
        "DSM",
        "15176"
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    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}