{
    "type": "genome",
    "identifier": "GCF_000159135.1",
    "organism": "Corynebacterium striatum ATCC 6940",
    "title": "Corynebacterium striatum ATCC 6940",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Baylor College of Medicine",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000159135.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN00001507",
        "wgs_master": "ACGE00000000.1",
        "refseq_category": "na",
        "taxid": "525268",
        "species_taxid": "43770",
        "organism_name": "Corynebacterium striatum ATCC 6940",
        "infraspecific_name": "strain=ATCC 6940",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2009/05/05",
        "asm_name": "ASM15913v1",
        "asm_submitter": "Baylor College of Medicine",
        "gbrs_paired_asm": "GCA_000159135.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/159/135/GCF_000159135.1_ASM15913v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2828991",
        "genome_size_ungapped": "2724288",
        "gc_percent": "59.500000",
        "replicon_count": "0",
        "scaffold_count": "85",
        "contig_count": "176",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000159135.1-RS_2024_05_15",
        "annotation_date": "2024-05-15",
        "total_gene_count": "2641",
        "protein_coding_gene_count": "2499",
        "non_coding_gene_count": "53",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2009-05-05",
    "dateModified": "2009-05-05",
    "datePublished": "2009-05-05",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Corynebacterium striatum ATCC 6940"
        ],
        "sample_taxid": [
            "525268"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not determined"
        ],
        "sample_host_location_id": [],
        "data_size": "0.779 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.37,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2828991",
        "Number of Sequences": "85",
        "Longest Sequences (bp)": "624609",
        "N50 (bp)": "357794",
        "Gap Ratio (%)": "3.701108",
        "GCcontent (%)": "59.4",
        "Number of CDSs": "2554",
        "Average Protein Length": "309.6",
        "Coding Ratio (%)": "83.8",
        "Number of rRNAs": "3",
        "Number of tRNAs": "50",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Corynebacterium striatum",
                "strain": "strain=ATCC 6940",
                "accession": "GCA_000159135.1",
                "taxid": 43770,
                "species_taxid": 43770,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9987,
                "matched_fragments": 911,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Corynebacterium striatum",
                "strain": "strain=NBRC 15291",
                "accession": "GCA_006538485.1",
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                "species_taxid": 43770,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.8393,
                "matched_fragments": 898,
                "total_fragments": 925,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Corynebacterium striatum",
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                "accession": "GCA_900447675.1",
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Corynebacterium striatum",
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                "species_taxid": 43770,
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                "validated": true,
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                "total_fragments": 925,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Corynebacterium phoceense",
                "strain": "strain=MC1",
                "accession": "GCA_900092335.1",
                "taxid": 1686286,
                "species_taxid": 1686286,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.8129,
                "matched_fragments": 394,
                "total_fragments": 925,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium minutissimum",
                "strain": "strain=NCTC10288",
                "accession": "GCA_900478045.1",
                "taxid": 38301,
                "species_taxid": 38301,
                "relation_to_type": "type",
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                "ani": 80.2563,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium tuberculostearicum",
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                "accession": "GCA_016728365.1",
                "taxid": 38304,
                "species_taxid": 38304,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.0431,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium camporealensis",
                "strain": "strain=DSM 44610",
                "accession": "GCA_000980815.1",
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                "species_taxid": 161896,
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                "ani": 79.457,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium renale",
                "strain": "strain=NCTC7448",
                "accession": "GCA_900478035.1",
                "taxid": 1724,
                "species_taxid": 1724,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6834,
                "matched_fragments": 124,
                "total_fragments": 925,
                "ani_threshold": 95,
                "status": "below_threshold"
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        ],
        "cc_result": {
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            "contamination": 0.0,
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                "accession": "GCF_000159135.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
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                "accession": "GCF_001586215.1",
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}