{
    "type": "genome",
    "identifier": "GCF_000159995.1",
    "organism": "Alloprevotella tannerae ATCC 51259",
    "title": "Alloprevotella tannerae ATCC 51259",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Washington University Genome Sequencing Center",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000159995.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN00008849",
        "wgs_master": "ACIJ00000000.2",
        "refseq_category": "reference genome",
        "taxid": "626522",
        "species_taxid": "76122",
        "organism_name": "Alloprevotella tannerae ATCC 51259",
        "infraspecific_name": "strain=ATCC 51259",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2009/09/16",
        "asm_name": "ASM15999v1",
        "asm_submitter": "Washington University Genome Sequencing Center",
        "gbrs_paired_asm": "GCA_000159995.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/159/995/GCF_000159995.1_ASM15999v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2585719",
        "genome_size_ungapped": "2582919",
        "gc_percent": "46.500000",
        "replicon_count": "0",
        "scaffold_count": "6",
        "contig_count": "34",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000159995.1-RS_2025_01_08",
        "annotation_date": "2025-01-08",
        "total_gene_count": "2151",
        "protein_coding_gene_count": "2009",
        "non_coding_gene_count": "53",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2009-09-16",
    "dateModified": "2009-09-16",
    "datePublished": "2009-09-16",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Alloprevotella tannerae ATCC 51259"
        ],
        "sample_taxid": [
            "626522"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not determined"
        ],
        "sample_host_location_id": [],
        "data_size": "0.734 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2585719",
        "Number of Sequences": "6",
        "Longest Sequences (bp)": "1429330",
        "N50 (bp)": "1429330",
        "Gap Ratio (%)": "0.108287",
        "GCcontent (%)": "46.6",
        "Number of CDSs": "1989",
        "Average Protein Length": "346.1",
        "Coding Ratio (%)": "79.9",
        "Number of rRNAs": "7",
        "Number of tRNAs": "48",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Alloprevotella tannerae",
                "strain": "strain=ATCC 51259",
                "accession": "GCA_000159995.1",
                "taxid": 76122,
                "species_taxid": 76122,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 860,
                "total_fragments": 860,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Bacteroides zoogleoformans",
                "strain": "strain=ATCC 33285",
                "accession": "GCA_002998435.1",
                "taxid": 28119,
                "species_taxid": 28119,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.7623,
                "matched_fragments": 63,
                "total_fragments": 860,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Prevotella koreensis",
                "strain": "strain=KCOM 3155",
                "accession": "GCA_003977605.1",
                "taxid": 2490854,
                "species_taxid": 2490854,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.4697,
                "matched_fragments": 70,
                "total_fragments": 860,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacteroides zoogleoformans",
                "strain": "strain=ATCC 33285",
                "accession": "GCA_007830715.1",
                "taxid": 28119,
                "species_taxid": 28119,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.242,
                "matched_fragments": 58,
                "total_fragments": 860,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Prevotellamassilia timonensis",
                "strain": "strain=Marseille-P2831",
                "accession": "GCA_900106785.1",
                "taxid": 1852370,
                "species_taxid": 1852370,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.9131,
                "matched_fragments": 55,
                "total_fragments": 860,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alloprevotella rava",
                "strain": "strain=DSM 22548",
                "accession": "GCA_014195585.1",
                "taxid": 671218,
                "species_taxid": 671218,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.095,
                "matched_fragments": 86,
                "total_fragments": 860,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000159995.1",
                "gtdb_species": "s__Alloprevotella tannerae",
                "ani": 100.0,
                "matched_fragments": 860,
                "total_fragments": 860,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Alloprevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.74",
                "min_intra_species_ani": "96.60",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCA_015259125.1",
                "gtdb_species": "s__Alloprevotella tannerae_A",
                "ani": 94.4788,
                "matched_fragments": 665,
                "total_fragments": 860,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Alloprevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.55",
                "min_intra_species_ani": "97.55",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_015259305.1",
                "gtdb_species": "s__Alloprevotella tannerae_B",
                "ani": 93.3368,
                "matched_fragments": 453,
                "total_fragments": 860,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Alloprevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900539625.1",
                "gtdb_species": "s__Alloprevotella sp900539625",
                "ani": 79.2613,
                "matched_fragments": 55,
                "total_fragments": 860,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Alloprevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.08",
                "min_intra_species_ani": "97.36",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.77",
                "num_clustered_genomes": 5,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.523,
        "cell_length": -0.155,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 35.0,
        "optimum_ph": 7.0,
        "genome_size": 2582919.0,
        "gc_content": 46.6,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Alloprevotella",
        "tannerae",
        "ATCC",
        "51259"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}