{
    "type": "genome",
    "identifier": "GCF_000160095.1",
    "organism": "Hungatella hathewayi DSM 13479",
    "title": "Hungatella hathewayi DSM 13479",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Washington University Genome Sequencing Center",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000160095.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN00008805",
        "wgs_master": "ACIO00000000.1",
        "refseq_category": "na",
        "taxid": "566550",
        "species_taxid": "154046",
        "organism_name": "Hungatella hathewayi DSM 13479",
        "infraspecific_name": "strain=DSM 13479",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2009/05/08",
        "asm_name": "ASM16009v1",
        "asm_submitter": "Washington University Genome Sequencing Center",
        "gbrs_paired_asm": "GCA_000160095.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/160/095/GCF_000160095.1_ASM16009v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "7163884",
        "genome_size_ungapped": "6626224",
        "gc_percent": "48.000000",
        "replicon_count": "0",
        "scaffold_count": "714",
        "contig_count": "1294",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000160095.1-RS_2024_06_16",
        "annotation_date": "2024-06-16",
        "total_gene_count": "6756",
        "protein_coding_gene_count": "6263",
        "non_coding_gene_count": "66",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2009-05-08",
    "dateModified": "2009-05-08",
    "datePublished": "2009-05-08",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Hungatella hathewayi DSM 13479"
        ],
        "sample_taxid": [
            "566550"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not determined"
        ],
        "sample_host_location_id": [],
        "data_size": "1.916 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 79.17,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "7163884",
        "Number of Sequences": "714",
        "Longest Sequences (bp)": "174489",
        "N50 (bp)": "31175",
        "Gap Ratio (%)": "7.505161",
        "GCcontent (%)": "48.1",
        "Number of CDSs": "5498",
        "Average Protein Length": "301.8",
        "Coding Ratio (%)": "69.5",
        "Number of rRNAs": "0",
        "Number of tRNAs": "56",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Hungatella hathewayi",
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                "accession": "GCA_000160095.1",
                "taxid": 154046,
                "species_taxid": 154046,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 99.9997,
                "matched_fragments": 1963,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Hungatella hathewayi",
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                "accession": "GCA_025149285.1",
                "taxid": 154046,
                "species_taxid": 154046,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 99.7089,
                "matched_fragments": 1975,
                "total_fragments": 2099,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Hungatella effluvii",
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                "accession": "GCA_003201875.1",
                "taxid": 1096246,
                "species_taxid": 1096246,
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                "matched_fragments": 1352,
                "total_fragments": 2099,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Eisenbergiella tayi",
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                "accession": "GCA_001881565.1",
                "taxid": 1432052,
                "species_taxid": 1432052,
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                "validated": true,
                "ani": 81.4957,
                "matched_fragments": 165,
                "total_fragments": 2099,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterocloster asparagiformis",
                "strain": "strain=DSM 15981",
                "accession": "GCA_025149125.1",
                "taxid": 333367,
                "species_taxid": 333367,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.224,
                "matched_fragments": 209,
                "total_fragments": 2099,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lacrimispora sphenoides",
                "strain": "strain=ATCC 19403",
                "accession": "GCA_900105615.1",
                "taxid": 29370,
                "species_taxid": 29370,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1529,
                "matched_fragments": 265,
                "total_fragments": 2099,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lacrimispora sphenoides",
                "strain": "strain=NCTC507",
                "accession": "GCA_900461315.1",
                "taxid": 29370,
                "species_taxid": 29370,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1288,
                "matched_fragments": 268,
                "total_fragments": 2099,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Diplocloster agilis",
                "strain": "strain=ASD5720",
                "accession": "GCA_019042275.1",
                "taxid": 2850323,
                "species_taxid": 2850323,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8316,
                "matched_fragments": 120,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lachnoclostridium pacaense",
                "strain": "strain=Marseille-P3100",
                "accession": "GCA_900566185.1",
                "taxid": 1917870,
                "species_taxid": 1917870,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.425,
                "matched_fragments": 91,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Anaerostipes caccae",
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                "accession": "GCA_025146005.1",
                "taxid": 105841,
                "species_taxid": 105841,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0495,
                "matched_fragments": 68,
                "total_fragments": 2099,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 4.17,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
            {
                "accession": "GCF_005845265.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Hungatella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.89",
                "min_intra_species_ani": "98.68",
                "mean_intra_species_af": "0.87",
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                "status": "conclusive"
            },
            {
                "accession": "GCF_003201875.1",
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                "status": "-"
            },
            {
                "accession": "GCF_000235505.1",
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                "status": "-"
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            {
                "accession": "GCF_900155545.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lacrimispora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003480435.1",
                "gtdb_species": "s__Copromonas sp900066055",
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            {
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                "mean_intra_species_ani": "N/A",
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            {
                "accession": "GCA_015057775.1",
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                "num_clustered_genomes": 1,
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.155,
        "cell_length": 0.301,
        "doubling_h": null,
        "growth_tmp": 33.5,
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        "gram_stain": 1.0,
        "sporulation": 1.0,
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        "bacillus_cell_shape": 1.0,
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        "coccobacillus_cell_shape": 0.0,
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    "_genome_taxon": [
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        "hathewayi",
        "DSM",
        "13479"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}