{ "type": "genome", "identifier": "GCF_000160435.1", "organism": "Kingella oralis ATCC 51147", "title": "Kingella oralis ATCC 51147", "description": "na", "data type": "Genome sequencing and assembly", "organization": "WUGSC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000160435.1", "bioproject": "PRJNA224116", "biosample": "SAMN00008832", "wgs_master": "ACJW00000000.2", "refseq_category": "na", "taxid": "629741", "species_taxid": "505", "organism_name": "Kingella oralis ATCC 51147", "infraspecific_name": "strain=ATCC 51147", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2009/04/29", "asm_name": "ASM16043v1", "asm_submitter": "WUGSC", "gbrs_paired_asm": "GCA_000160435.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/160/435/GCF_000160435.1_ASM16043v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2406675", "genome_size_ungapped": "2405975", "gc_percent": "54.500000", "replicon_count": "0", "scaffold_count": "5", "contig_count": "12", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000160435.1-RS_2024_05_15", "annotation_date": "2024-05-15", "total_gene_count": "2634", "protein_coding_gene_count": "2533", "non_coding_gene_count": "60", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2009-04-29", "dateModified": "2009-04-29", "datePublished": "2009-04-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Kingella oralis ATCC 51147" ], "sample_taxid": [ "629741" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not determined" ], "sample_host_location_id": [], "data_size": "0.659 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.74, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2406675", "Number of Sequences": "5", "Longest Sequences (bp)": "1078530", "N50 (bp)": "792850", "Gap Ratio (%)": "0.029086", "GCcontent (%)": "54.3", "Number of CDSs": "2407", "Average Protein Length": "277.2", "Coding Ratio (%)": "83.2", "Number of rRNAs": "5", "Number of tRNAs": "49", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Kingella oralis", "strain": "strain=ATCC 51147", "accession": "GCA_000160435.1", "taxid": 505, "species_taxid": 505, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 800, "total_fragments": 800, "ani_threshold": 95, "status": 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95, "status": "below_threshold" }, { "organism_name": "Uruburuella suis", "strain": "strain=1258/02", "accession": "GCA_022870845.1", "taxid": 252130, "species_taxid": 252130, "relation_to_type": "type", "validated": true, "ani": 77.756, "matched_fragments": 244, "total_fragments": 800, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Uruburuella suis", "strain": "strain=DSM 17474", "accession": "GCA_004341385.1", "taxid": 252130, "species_taxid": 252130, "relation_to_type": "type", "validated": true, "ani": 77.6636, "matched_fragments": 238, "total_fragments": 800, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.74, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014054985.1", "gtdb_species": "s__Kingella_B oralis", "ani": 99.9897, "matched_fragments": 795, "total_fragments": 800, "gtdb_taxonomy": 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