{
    "type": "genome",
    "identifier": "GCF_000160455.2",
    "organism": "Acetomicrobium hydrogeniformans ATCC BAA-1850",
    "title": "Acetomicrobium hydrogeniformans ATCC BAA-1850",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "The Genome Center",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000160455.2",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN00009040",
        "wgs_master": "ACJX00000000.3",
        "refseq_category": "reference genome",
        "taxid": "592015",
        "species_taxid": "649746",
        "organism_name": "Acetomicrobium hydrogeniformans ATCC BAA-1850",
        "infraspecific_name": "strain=OS1",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2015/11/12",
        "asm_name": "ASM16045v2",
        "asm_submitter": "The Genome Center",
        "gbrs_paired_asm": "GCA_000160455.2",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/160/455/GCF_000160455.2_ASM16045v2",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2123925",
        "genome_size_ungapped": "2123925",
        "gc_percent": "46.500000",
        "replicon_count": "0",
        "scaffold_count": "8",
        "contig_count": "8",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000160455.2-RS_2024_12_09",
        "annotation_date": "2024-12-09",
        "total_gene_count": "2132",
        "protein_coding_gene_count": "2060",
        "non_coding_gene_count": "58",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2015-11-12",
    "dateModified": "2015-11-12",
    "datePublished": "2015-11-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Acetomicrobium hydrogeniformans ATCC BAA-1850"
        ],
        "sample_taxid": [
            "592015"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not determined"
        ],
        "sample_host_location_id": [],
        "data_size": "0.606 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2123925",
        "Number of Sequences": "8",
        "Longest Sequences (bp)": "2103414",
        "N50 (bp)": "2103414",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "46.5",
        "Number of CDSs": "2057",
        "Average Protein Length": "312.3",
        "Coding Ratio (%)": "90.7",
        "Number of rRNAs": "6",
        "Number of tRNAs": "48",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Acetomicrobium hydrogeniformans",
                "strain": "strain=OS1",
                "accession": "GCA_000160455.2",
                "taxid": 649746,
                "species_taxid": 649746,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 705,
                "total_fragments": 705,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Acetomicrobium thermoterrenum",
                "strain": "strain=DSM 13490",
                "accession": "GCA_900107215.1",
                "taxid": 1120986,
                "species_taxid": 1120986,
                "relation_to_type": "type",
                "validated": true,
                "ani": 96.8224,
                "matched_fragments": 592,
                "total_fragments": 705,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Acetomicrobium mobile",
                "strain": "strain=DSM 13181",
                "accession": "GCA_000266925.1",
                "taxid": 97477,
                "species_taxid": 97477,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.846,
                "matched_fragments": 224,
                "total_fragments": 705,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000160455.2",
                "gtdb_species": "s__Acetomicrobium hydrogeniformans",
                "ani": 100.0,
                "matched_fragments": 705,
                "total_fragments": 705,
                "gtdb_taxonomy": "d__Bacteria;p__Synergistota;c__Synergistia;o__Synergistales;f__Acetomicrobiaceae;g__Acetomicrobium",
                "ani_circumscription_radius": 96.8272,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_900107215.1",
                "gtdb_species": "s__Acetomicrobium thermoterrenum",
                "ani": 96.8224,
                "matched_fragments": 592,
                "total_fragments": 705,
                "gtdb_taxonomy": "d__Bacteria;p__Synergistota;c__Synergistia;o__Synergistales;f__Acetomicrobiaceae;g__Acetomicrobium",
                "ani_circumscription_radius": 96.8272,
                "mean_intra_species_ani": "97.07",
                "min_intra_species_ani": "97.07",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_002433005.1",
                "gtdb_species": "s__Acetomicrobium sp002433005",
                "ani": 95.8967,
                "matched_fragments": 557,
                "total_fragments": 705,
                "gtdb_taxonomy": "d__Bacteria;p__Synergistota;c__Synergistia;o__Synergistales;f__Acetomicrobiaceae;g__Acetomicrobium",
                "ani_circumscription_radius": 96.2563,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002385485.1",
                "gtdb_species": "s__Acetomicrobium sp002385485",
                "ani": 95.5756,
                "matched_fragments": 430,
                "total_fragments": 705,
                "gtdb_taxonomy": "d__Bacteria;p__Synergistota;c__Synergistia;o__Synergistales;f__Acetomicrobiaceae;g__Acetomicrobium",
                "ani_circumscription_radius": 96.1959,
                "mean_intra_species_ani": "98.11",
                "min_intra_species_ani": "96.55",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_900129645.1",
                "gtdb_species": "s__Acetomicrobium flavidum",
                "ani": 82.4912,
                "matched_fragments": 216,
                "total_fragments": 705,
                "gtdb_taxonomy": "d__Bacteria;p__Synergistota;c__Synergistia;o__Synergistales;f__Acetomicrobiaceae;g__Acetomicrobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.26",
                "min_intra_species_ani": "98.17",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_012518015.1",
                "gtdb_species": "s__Acetomicrobium sp012518015",
                "ani": 78.4938,
                "matched_fragments": 116,
                "total_fragments": 705,
                "gtdb_taxonomy": "d__Bacteria;p__Synergistota;c__Synergistia;o__Synergistales;f__Acetomicrobiaceae;g__Acetomicrobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.213,
        "cell_length": 0.301,
        "doubling_h": 0.53,
        "growth_tmp": 52.433,
        "optimum_tmp": 55.625,
        "optimum_ph": 6.95,
        "genome_size": 2049994.333,
        "gc_content": 48.0,
        "coding_genes": 2012.0,
        "rRNA16S_genes": 2.0,
        "tRNA_genes": 49.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.5,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Acetomicrobium",
        "hydrogeniformans",
        "ATCC",
        "BAA-1850"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}