{
    "type": "genome",
    "identifier": "GCF_000160475.1",
    "organism": "Fusobacterium periodonticum ATCC 33693",
    "title": "Fusobacterium periodonticum ATCC 33693",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Washington University Genome Sequencing Center",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000160475.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN00008828",
        "wgs_master": "ACJY00000000.1",
        "refseq_category": "reference genome",
        "taxid": "546275",
        "species_taxid": "860",
        "organism_name": "Fusobacterium periodonticum ATCC 33693",
        "infraspecific_name": "strain=ATCC 33693",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2009/04/29",
        "asm_name": "ASM16047v1",
        "asm_submitter": "Washington University Genome Sequencing Center",
        "gbrs_paired_asm": "GCA_000160475.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/160/475/GCF_000160475.1_ASM16047v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2615003",
        "genome_size_ungapped": "2567761",
        "gc_percent": "27.500000",
        "replicon_count": "0",
        "scaffold_count": "53",
        "contig_count": "143",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000160475.1-RS_2024_05_01",
        "annotation_date": "2024-05-01",
        "total_gene_count": "2568",
        "protein_coding_gene_count": "2390",
        "non_coding_gene_count": "57",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2009-04-29",
    "dateModified": "2009-04-29",
    "datePublished": "2009-04-29",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Fusobacterium periodonticum ATCC 33693"
        ],
        "sample_taxid": [
            "546275"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not determined"
        ],
        "sample_host_location_id": [],
        "data_size": "0.686 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2615003",
        "Number of Sequences": "53",
        "Longest Sequences (bp)": "844783",
        "N50 (bp)": "801742",
        "Gap Ratio (%)": "1.806575",
        "GCcontent (%)": "27.4",
        "Number of CDSs": "2454",
        "Average Protein Length": "308.7",
        "Coding Ratio (%)": "86.9",
        "Number of rRNAs": "8",
        "Number of tRNAs": "45",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Fusobacterium periodonticum",
                "strain": "strain=ATCC 33693",
                "accession": "GCA_000160475.1",
                "taxid": 860,
                "species_taxid": 860,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 99.9997,
                "matched_fragments": 851,
                "total_fragments": 854,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Fusobacterium pseudoperiodonticum",
                "strain": "strain=KCOM 1259",
                "accession": "GCA_002761955.1",
                "taxid": 2663009,
                "species_taxid": 2663009,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.3911,
                "matched_fragments": 639,
                "total_fragments": 854,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fusobacterium hwasookii",
                "strain": "strain=KCOM 1249",
                "accession": "GCA_014217355.1",
                "taxid": 1583098,
                "species_taxid": 1583098,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.1523,
                "matched_fragments": 591,
                "total_fragments": 854,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fusobacterium hwasookii",
                "strain": "strain=ChDC F128",
                "accession": "GCA_000292935.1",
                "taxid": 1583098,
                "species_taxid": 1583098,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.1506,
                "matched_fragments": 585,
                "total_fragments": 854,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fusobacterium nucleatum subsp. polymorphum",
                "strain": "strain=ATCC 10953",
                "accession": "GCA_000153625.1",
                "taxid": 76857,
                "species_taxid": 851,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.5945,
                "matched_fragments": 579,
                "total_fragments": 854,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fusobacterium nucleatum subsp. polymorphum",
                "strain": "strain=NCTC10562",
                "accession": "GCA_001457555.1",
                "taxid": 76857,
                "species_taxid": 851,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.5286,
                "matched_fragments": 586,
                "total_fragments": 854,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fusobacterium canifelinum",
                "strain": "strain=FDAARGOS_1126",
                "accession": "GCA_016724785.1",
                "taxid": 285729,
                "species_taxid": 285729,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.014,
                "matched_fragments": 575,
                "total_fragments": 854,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000160475.1",
                "gtdb_species": "s__Fusobacterium periodonticum",
                "ani": 99.9997,
                "matched_fragments": 851,
                "total_fragments": 854,
                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000163935.1",
                "gtdb_species": "s__Fusobacterium periodonticum_B",
                "ani": 92.6176,
                "matched_fragments": 666,
                "total_fragments": 854,
                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_002761955.1",
                "gtdb_species": "s__Fusobacterium pseudoperiodonticum",
                "ani": 92.414,
                "matched_fragments": 639,
                "total_fragments": 854,
                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium",
                "ani_circumscription_radius": 95.1543,
                "mean_intra_species_ani": "96.63",
                "min_intra_species_ani": "95.97",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 10,
                "status": "-"
            },
            {
                "accession": "GCF_002763915.1",
                "gtdb_species": "s__Fusobacterium periodonticum_D",
                "ani": 92.2452,
                "matched_fragments": 656,
                "total_fragments": 854,
                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium",
                "ani_circumscription_radius": 95.1543,
                "mean_intra_species_ani": "96.98",
                "min_intra_species_ani": "95.97",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 11,
                "status": "-"
            },
            {
                "accession": "GCF_000235465.1",
                "gtdb_species": "s__Fusobacterium sp000235465",
                "ani": 91.6369,
                "matched_fragments": 554,
                "total_fragments": 854,
                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014217355.1",
                "gtdb_species": "s__Fusobacterium hwasookii",
                "ani": 87.1259,
                "matched_fragments": 593,
                "total_fragments": 854,
                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.78",
                "min_intra_species_ani": "97.42",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 10,
                "status": "-"
            },
            {
                "accession": "GCF_001457555.1",
                "gtdb_species": "s__Fusobacterium polymorphum",
                "ani": 86.495,
                "matched_fragments": 587,
                "total_fragments": 854,
                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.55",
                "min_intra_species_ani": "95.37",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.79",
                "num_clustered_genomes": 30,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.302,
        "cell_length": 0.602,
        "doubling_h": -0.328,
        "growth_tmp": 37.0,
        "optimum_tmp": 30.0,
        "optimum_ph": 7.0,
        "genome_size": 2430784.467,
        "gc_content": 28.023,
        "coding_genes": 2215.6,
        "rRNA16S_genes": 5.708,
        "tRNA_genes": 45.3,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 1.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Fusobacterium",
        "periodonticum",
        "ATCC",
        "33693"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}