{
    "type": "genome",
    "identifier": "GCF_000160835.1",
    "organism": "Limosilactobacillus antri DSM 16041",
    "title": "Limosilactobacillus antri DSM 16041",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Baylor College of Medicine",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000160835.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN00001477",
        "wgs_master": "ACLL00000000.1",
        "refseq_category": "reference genome",
        "taxid": "525309",
        "species_taxid": "227943",
        "organism_name": "Limosilactobacillus antri DSM 16041",
        "infraspecific_name": "strain=DSM 16041",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2009/09/22",
        "asm_name": "ASM16083v1",
        "asm_submitter": "Baylor College of Medicine",
        "gbrs_paired_asm": "GCA_000160835.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/160/835/GCF_000160835.1_ASM16083v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2302896",
        "genome_size_ungapped": "2242444",
        "gc_percent": "51.000000",
        "replicon_count": "0",
        "scaffold_count": "20",
        "contig_count": "76",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000160835.1-RS_2024_03_28",
        "annotation_date": "2024-03-28",
        "total_gene_count": "2198",
        "protein_coding_gene_count": "2091",
        "non_coding_gene_count": "64",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2009-09-22",
    "dateModified": "2009-09-22",
    "datePublished": "2009-09-22",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Limosilactobacillus antri DSM 16041"
        ],
        "sample_taxid": [
            "525309"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not determined"
        ],
        "sample_host_location_id": [],
        "data_size": "0.641 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2302896",
        "Number of Sequences": "20",
        "Longest Sequences (bp)": "855886",
        "N50 (bp)": "754183",
        "Gap Ratio (%)": "2.625043",
        "GCcontent (%)": "51.1",
        "Number of CDSs": "2149",
        "Average Protein Length": "305.0",
        "Coding Ratio (%)": "85.4",
        "Number of rRNAs": "2",
        "Number of tRNAs": "59",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Limosilactobacillus antri",
                "strain": "strain=DSM 16041",
                "accession": "GCA_000160835.1",
                "taxid": 227943,
                "species_taxid": 227943,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.994,
                "matched_fragments": 754,
                "total_fragments": 760,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Limosilactobacillus antri",
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                "accession": "GCA_001435475.1",
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                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9141,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Limosilactobacillus oris",
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                "species_taxid": 1632,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Limosilactobacillus panis",
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                "relation_to_type": "type",
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                "total_fragments": 760,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Limosilactobacillus panis",
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                "relation_to_type": "type",
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                "ani": 80.0431,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Limosilactobacillus pontis",
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                "accession": "GCA_001435345.1",
                "taxid": 35787,
                "species_taxid": 35787,
                "relation_to_type": "type",
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                "ani": 79.5253,
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Limosilactobacillus avistercoris",
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                "accession": "GCA_014836425.1",
                "taxid": 2762243,
                "species_taxid": 2762243,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
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                "organism_name": "Limosilactobacillus secaliphilus",
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                "species_taxid": 396268,
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            },
            {
                "organism_name": "Limosilactobacillus mucosae",
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                "taxid": 97478,
                "species_taxid": 97478,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.11,
                "matched_fragments": 84,
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                "status": "below_threshold"
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        ],
        "cc_result": {
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            "contamination": 0.0,
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                "accession": "GCF_000160835.1",
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    },
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}