{
    "type": "genome",
    "identifier": "GCF_000162875.1",
    "organism": "Slackia exigua ATCC 700122",
    "title": "Slackia exigua ATCC 700122",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "WUGSC",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000162875.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN00008861",
        "wgs_master": "ACUX00000000.2",
        "refseq_category": "na",
        "taxid": "649764",
        "species_taxid": "84109",
        "organism_name": "Slackia exigua ATCC 700122",
        "infraspecific_name": "strain=ATCC 700122",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2009/09/16",
        "asm_name": "ASM16287v1",
        "asm_submitter": "WUGSC",
        "gbrs_paired_asm": "GCA_000162875.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/162/875/GCF_000162875.1_ASM16287v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2096289",
        "genome_size_ungapped": "2094589",
        "gc_percent": "62.000000",
        "replicon_count": "0",
        "scaffold_count": "2",
        "contig_count": "19",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000162875.1-RS_2024_12_23",
        "annotation_date": "2024-12-23",
        "total_gene_count": "1772",
        "protein_coding_gene_count": "1707",
        "non_coding_gene_count": "56",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2009-09-16",
    "dateModified": "2009-09-16",
    "datePublished": "2009-09-16",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Slackia exigua ATCC 700122"
        ],
        "sample_taxid": [
            "649764"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not determined"
        ],
        "sample_host_location_id": [],
        "data_size": "0.579 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2096289",
        "Number of Sequences": "2",
        "Longest Sequences (bp)": "1431083",
        "N50 (bp)": "1431083",
        "Gap Ratio (%)": "0.081096",
        "GCcontent (%)": "62.2",
        "Number of CDSs": "1715",
        "Average Protein Length": "355.3",
        "Coding Ratio (%)": "87.2",
        "Number of rRNAs": "4",
        "Number of tRNAs": "49",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Slackia exigua",
                "strain": "strain=ATCC 700122",
                "accession": "GCA_000162875.1",
                "taxid": 84109,
                "species_taxid": 84109,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 698,
                "total_fragments": 698,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Slackia exigua",
                "strain": "strain=NCTC12994",
                "accession": "GCA_900450505.1",
                "taxid": 84109,
                "species_taxid": 84109,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9815,
                "matched_fragments": 695,
                "total_fragments": 698,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Slackia faecicanis",
                "strain": "strain=DSM 17537",
                "accession": "GCA_003725295.1",
                "taxid": 255723,
                "species_taxid": 255723,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5662,
                "matched_fragments": 200,
                "total_fragments": 698,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Berryella intestinalis",
                "strain": "strain=68-1-3",
                "accession": "GCA_000814825.1",
                "taxid": 1531429,
                "species_taxid": 1531429,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3277,
                "matched_fragments": 133,
                "total_fragments": 698,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Slackia piriformis",
                "strain": "strain=YIT 12062",
                "accession": "GCA_000296445.1",
                "taxid": 626934,
                "species_taxid": 626934,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1393,
                "matched_fragments": 123,
                "total_fragments": 698,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Adlercreutzia equolifaciens subsp. celatus",
                "strain": "strain=DSM 18785",
                "accession": "GCA_024171685.1",
                "taxid": 394340,
                "species_taxid": 446660,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8443,
                "matched_fragments": 121,
                "total_fragments": 698,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Adlercreutzia equolifaciens subsp. celatus",
                "strain": "strain=DSM 18785",
                "accession": "GCA_003726015.1",
                "taxid": 394340,
                "species_taxid": 446660,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8316,
                "matched_fragments": 122,
                "total_fragments": 698,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Slackia isoflavoniconvertens",
                "strain": "strain=DSM 22006",
                "accession": "GCA_014192995.1",
                "taxid": 572010,
                "species_taxid": 572010,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7858,
                "matched_fragments": 117,
                "total_fragments": 698,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Eggerthella lenta",
                "strain": "strain=DSM 2243",
                "accession": "GCA_000024265.1",
                "taxid": 84112,
                "species_taxid": 84112,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.774,
                "matched_fragments": 174,
                "total_fragments": 698,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Eggerthella lenta",
                "strain": "strain=UCSF2243",
                "accession": "GCA_003339945.1",
                "taxid": 84112,
                "species_taxid": 84112,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7083,
                "matched_fragments": 164,
                "total_fragments": 698,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Eggerthella lenta",
                "strain": "strain=ATCC 25559",
                "accession": "GCA_003340105.1",
                "taxid": 84112,
                "species_taxid": 84112,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6587,
                "matched_fragments": 165,
                "total_fragments": 698,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Eggerthella sinensis",
                "strain": "strain=DSM 16107",
                "accession": "GCA_003725965.1",
                "taxid": 242230,
                "species_taxid": 242230,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4529,
                "matched_fragments": 173,
                "total_fragments": 698,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Raoultibacter massiliensis",
                "strain": "strain=Marseille-P2849",
                "accession": "GCA_900199545.1",
                "taxid": 1852371,
                "species_taxid": 1852371,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.317,
                "matched_fragments": 110,
                "total_fragments": 698,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000162875.1",
                "gtdb_species": "s__Slackia exigua",
                "ani": 100.0,
                "matched_fragments": 698,
                "total_fragments": 698,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Slackia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.04",
                "min_intra_species_ani": "98.10",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCF_003725295.1",
                "gtdb_species": "s__Slackia_A faecicanis",
                "ani": 78.5662,
                "matched_fragments": 200,
                "total_fragments": 698,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Slackia_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000814825.1",
                "gtdb_species": "s__Berryella intestinalis",
                "ani": 78.3921,
                "matched_fragments": 135,
                "total_fragments": 698,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Berryella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.96",
                "min_intra_species_ani": "96.96",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_011038975.1",
                "gtdb_species": "s__CAAEEV01 sp011038975",
                "ani": 78.2488,
                "matched_fragments": 156,
                "total_fragments": 698,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__CAAEEV01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_003339845.1",
                "gtdb_species": "s__Gordonibacter sp003339845",
                "ani": 78.2225,
                "matched_fragments": 143,
                "total_fragments": 698,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Gordonibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_013185065.1",
                "gtdb_species": "s__CAAEEV01 sp013185065",
                "ani": 78.1655,
                "matched_fragments": 151,
                "total_fragments": 698,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__CAAEEV01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.04",
                "min_intra_species_ani": "97.04",
                "mean_intra_species_af": "0.76",
                "min_intra_species_af": "0.76",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000296445.1",
                "gtdb_species": "s__Slackia_A piriformis",
                "ani": 78.0528,
                "matched_fragments": 121,
                "total_fragments": 698,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Slackia_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.02",
                "min_intra_species_ani": "96.04",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_009911695.1",
                "gtdb_species": "s__QWKK01 sp009911695",
                "ani": 78.0477,
                "matched_fragments": 126,
                "total_fragments": 698,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__QWKK01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.01",
                "min_intra_species_ani": "97.98",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_900553775.1",
                "gtdb_species": "s__Slackia_A sp900553775",
                "ani": 77.9548,
                "matched_fragments": 160,
                "total_fragments": 698,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Slackia_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.24",
                "min_intra_species_ani": "98.24",
                "mean_intra_species_af": "0.77",
                "min_intra_species_af": "0.77",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_900555495.1",
                "gtdb_species": "s__Slackia_A sp900555495",
                "ani": 77.9423,
                "matched_fragments": 121,
                "total_fragments": 698,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Slackia_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_013201155.1",
                "gtdb_species": "s__Berryella sp013201155",
                "ani": 77.7779,
                "matched_fragments": 105,
                "total_fragments": 698,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Berryella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.94",
                "min_intra_species_ani": "98.86",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_018715725.1",
                "gtdb_species": "s__Aveggerthella excrementigallinarum",
                "ani": 77.5594,
                "matched_fragments": 118,
                "total_fragments": 698,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Aveggerthella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017459925.1",
                "gtdb_species": "s__UBA9715 sp017459925",
                "ani": 77.5334,
                "matched_fragments": 123,
                "total_fragments": 698,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__UBA9715",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900754495.1",
                "gtdb_species": "s__Aphodovivens avicola",
                "ani": 77.5064,
                "matched_fragments": 125,
                "total_fragments": 698,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Aphodovivens",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.28",
                "min_intra_species_ani": "95.91",
                "mean_intra_species_af": "0.79",
                "min_intra_species_af": "0.73",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_900540955.1",
                "gtdb_species": "s__Paratractidigestivibacter sp900540955",
                "ani": 77.4378,
                "matched_fragments": 63,
                "total_fragments": 698,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Paratractidigestivibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.08",
                "min_intra_species_ani": "96.08",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_910589695.1",
                "gtdb_species": "s__QWKK01 sp910589695",
                "ani": 77.4291,
                "matched_fragments": 114,
                "total_fragments": 698,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__QWKK01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_910589125.1",
                "gtdb_species": "s__MGBC163016 sp910589125",
                "ani": 76.818,
                "matched_fragments": 74,
                "total_fragments": 698,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__MGBC163016",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900314535.1",
                "gtdb_species": "s__UBA7748 sp900314535",
                "ani": 76.4104,
                "matched_fragments": 61,
                "total_fragments": 698,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__UBA7748",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.59",
                "min_intra_species_ani": "96.11",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 25,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.381,
        "cell_length": -0.01,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.0,
        "optimum_ph": 7.0,
        "genome_size": 2094589.0,
        "gc_content": 62.1,
        "coding_genes": 2727.667,
        "rRNA16S_genes": 2.0,
        "tRNA_genes": 48.0,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Slackia",
        "exigua",
        "ATCC",
        "700122"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}