{ "type": "genome", "identifier": "GCF_000163435.1", "organism": "Corynebacterium jeikeium ATCC 43734", "title": "Corynebacterium jeikeium ATCC 43734", "description": "na", "data type": "Genome sequencing and assembly", "organization": "BCM", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000163435.1", "bioproject": "PRJNA224116", "biosample": "SAMN00001506", "wgs_master": "ACYW00000000.1", "refseq_category": "na", "taxid": "525262", "species_taxid": "38289", "organism_name": "Corynebacterium jeikeium ATCC 43734", "infraspecific_name": "strain=ATCC 43734", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2009/09/22", "asm_name": "ASM16343v1", "asm_submitter": "BCM", "gbrs_paired_asm": "GCA_000163435.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/163/435/GCF_000163435.1_ASM16343v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2492821", "genome_size_ungapped": "2426461", "gc_percent": "61.500000", "replicon_count": "0", "scaffold_count": "21", "contig_count": "93", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000163435.1-RS_2024_05_15", "annotation_date": "2024-05-15", "total_gene_count": "2214", "protein_coding_gene_count": "2108", "non_coding_gene_count": "56", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2009-09-22", "dateModified": "2009-09-22", "datePublished": "2009-09-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Corynebacterium jeikeium ATCC 43734" ], "sample_taxid": [ "525262" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not determined" ], "sample_host_location_id": [], "data_size": "0.689 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 99.54, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2492821", "Number of Sequences": "21", "Longest Sequences (bp)": "590804", "N50 (bp)": "478447", "Gap Ratio (%)": "2.662044", "GCcontent (%)": "61.6", "Number of CDSs": "2130", "Average Protein Length": "335.4", "Coding Ratio (%)": "86.0", "Number of rRNAs": "3", "Number of tRNAs": "51", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Corynebacterium jeikeium", "strain": "strain=ATCC 43734", "accession": "GCA_000163435.1", "taxid": 38289, "species_taxid": 38289, "relation_to_type": "suspected-type", "validated": true, "ani": 99.9942, "matched_fragments": 814, "total_fragments": 822, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Corynebacterium jeikeium", "strain": "strain=ATCC 43734", "accession": "GCA_001999385.1", "taxid": 38289, "species_taxid": 38289, "relation_to_type": "suspected-type", "validated": true, "ani": 99.9559, "matched_fragments": 773, "total_fragments": 822, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Corynebacterium jeikeium", "strain": "strain=NCTC11913", "accession": "GCA_900461185.1", "taxid": 38289, "species_taxid": 38289, "relation_to_type": "suspected-type", "validated": true, "ani": 99.8806, "matched_fragments": 816, "total_fragments": 822, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Corynebacterium urealyticum", "strain": "strain=FDAARGOS_994", "accession": "GCA_016127975.1", "taxid": 43771, "species_taxid": 43771, "relation_to_type": "type", "validated": true, "ani": 80.407, "matched_fragments": 317, "total_fragments": 822, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium urealyticum", "strain": "strain=NCTC12011", "accession": "GCA_900187235.1", "taxid": 43771, "species_taxid": 43771, "relation_to_type": "type", "validated": true, "ani": 80.2536, "matched_fragments": 320, "total_fragments": 822, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium falsenii", "strain": "strain=FDAARGOS_1494", "accession": "GCA_020099275.1", "taxid": 108486, "species_taxid": 108486, "relation_to_type": "type", "validated": true, "ani": 79.6752, "matched_fragments": 364, "total_fragments": 822, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium dentalis", "strain": "strain=Marseille-P4122", "accession": "GCA_900232865.1", "taxid": 2014528, "species_taxid": 2014528, "relation_to_type": "type", "validated": true, "ani": 78.9948, "matched_fragments": 272, "total_fragments": 822, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium zhongnanshanii", "strain": "strain=zg-320", "accession": "GCA_014490575.1", "taxid": 2768834, "species_taxid": 2768834, "relation_to_type": "type", "validated": true, "ani": 78.954, "matched_fragments": 247, "total_fragments": 822, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium xerosis", "strain": "strain=NBRC 16721", "accession": "GCA_001552415.1", "taxid": 1725, "species_taxid": 1725, "relation_to_type": "suspected-type", "validated": true, "ani": 77.7148, "matched_fragments": 236, "total_fragments": 822, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium yudongzhengii", "strain": "strain=2183", "accession": "GCA_003065405.1", "taxid": 2080740, "species_taxid": 2080740, "relation_to_type": "type", "validated": true, "ani": 77.5284, "matched_fragments": 161, "total_fragments": 822, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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