{ "type": "genome", "identifier": "GCF_000166055.1", "organism": "Rhodomicrobium vannielii ATCC 17100", "title": "Rhodomicrobium vannielii ATCC 17100", "description": "na", "data type": "Genome sequencing and assembly", "organization": "US DOE Joint Genome Institute (JGI-PGF)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000166055.1", "bioproject": "PRJNA224116", "biosample": "SAMN00007427", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "648757", "species_taxid": "1069", "organism_name": "Rhodomicrobium vannielii ATCC 17100", "infraspecific_name": "strain=ATCC 17100", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2010/11/05", "asm_name": "ASM16605v1", "asm_submitter": "US DOE Joint Genome Institute (JGI-PGF)", "gbrs_paired_asm": "GCA_000166055.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/166/055/GCF_000166055.1_ASM16605v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4014469", "genome_size_ungapped": "4014469", "gc_percent": "62.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000166055.1-RS_2024_04_29", "annotation_date": "2024-04-29", "total_gene_count": "3713", "protein_coding_gene_count": "3592", "non_coding_gene_count": "58", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2010-11-05", "dateModified": "2010-11-05", "datePublished": "2010-11-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Rhodomicrobium vannielii ATCC 17100" ], "sample_taxid": [ "648757" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [ "None" ], "sample_host_disease_id": [], "sample_host_location": [ "Missing" ], "sample_host_location_id": [], "data_size": "1.117 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4014469", "Number of Sequences": "1", "Longest Sequences (bp)": "4014469", "N50 (bp)": "4014469", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.2", "Number of CDSs": "3704", "Average Protein Length": "309.1", "Coding Ratio (%)": "85.6", "Number of rRNAs": "6", "Number of tRNAs": "51", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rhodomicrobium udaipurense", "strain": "strain=JA643", "accession": "GCA_016461795.1", "taxid": 1202716, "species_taxid": 1202716, 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"organism_name": "Dichotomicrobium thermohalophilum", "strain": "strain=DSM 5002", "accession": "GCA_003550175.1", "taxid": 933063, "species_taxid": 933063, "relation_to_type": "type", "validated": true, "ani": 76.5736, "matched_fragments": 131, "total_fragments": 1338, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium mesophilicum", "strain": "strain=NBRC 15688", "accession": "GCA_022179445.1", "taxid": 39956, "species_taxid": 39956, "relation_to_type": "type", "validated": true, "ani": 76.5279, "matched_fragments": 131, "total_fragments": 1338, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pannonibacter indicus", "strain": "strain=DSM 23407", "accession": "GCA_001418225.1", "taxid": 466044, "species_taxid": 466044, "relation_to_type": "type", "validated": true, "ani": 76.466, "matched_fragments": 105, "total_fragments": 1338, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kaistia hirudinis", 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