{ "type": "genome", "identifier": "GCF_000166195.2", "organism": "Mucilaginibacter paludis DSM 18603", "title": "Mucilaginibacter paludis DSM 18603", "description": "na", "data type": "Genome sequencing and assembly", "organization": "US DOE Joint Genome Institute (JGI-PGF)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000166195.2", "bioproject": "PRJNA224116", "biosample": "SAMN02256535", "wgs_master": "AEIH00000000.2", "refseq_category": "reference genome", "taxid": "714943", "species_taxid": "423351", "organism_name": "Mucilaginibacter paludis DSM 18603", "infraspecific_name": "strain=DSM 18603", "isolate": "na", "version_status": "latest", "assembly_level": "Chromosome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2012/01/24", "asm_name": "ASM16619v3", "asm_submitter": "US DOE Joint Genome Institute (JGI-PGF)", "gbrs_paired_asm": "GCA_000166195.3", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/166/195/GCF_000166195.2_ASM16619v3", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8408322", "genome_size_ungapped": "8407722", "gc_percent": "43.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "7", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000166195.2-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "7096", "protein_coding_gene_count": "6980", "non_coding_gene_count": "70", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2012-01-24", "dateModified": "2012-01-24", "datePublished": "2012-01-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Mucilaginibacter paludis DSM 18603" ], "sample_taxid": [ "714943" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [ "None" ], "sample_host_disease_id": [], "sample_host_location": [ "Russia: western Siberia" ], "sample_host_location_id": [], "data_size": "2.375 MB", "sample_ph_range": { "min": 4282.0, "max": 4282.0 }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8408322", "Number of Sequences": "1", "Longest Sequences (bp)": "8408322", "N50 (bp)": "8408322", "Gap Ratio (%)": "0.007136", "GCcontent (%)": "42.9", "Number of CDSs": "6948", "Average Protein Length": "342.0", "Coding Ratio (%)": "84.8", "Number of rRNAs": "12", "Number of tRNAs": "56", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mucilaginibacter paludis", "strain": "strain=DSM 18603", "accession": "GCA_000166195.3", "taxid": 423351, 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"total_fragments": 2802, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter roseus", "strain": "strain=LMG 28454", "accession": "GCA_021215455.1", "taxid": 1528868, "species_taxid": 1528868, "relation_to_type": "type", "validated": true, "ani": 77.0983, "matched_fragments": 209, "total_fragments": 2802, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter lappiensis", "strain": "strain=ATCC BAA-1855", "accession": "GCA_900155965.1", "taxid": 354630, "species_taxid": 354630, "relation_to_type": "type", "validated": true, "ani": 77.0874, "matched_fragments": 296, "total_fragments": 2802, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter agri", "strain": "strain=R11", "accession": "GCA_009928685.1", "taxid": 2695265, "species_taxid": 2695265, "relation_to_type": "type", "validated": true, "ani": 77.0718, "matched_fragments": 229, "total_fragments": 2802, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter gotjawali", "strain": "strain=SA3-7", "accession": "GCA_002355435.1", "taxid": 1550579, "species_taxid": 1550579, "relation_to_type": "type", "validated": true, "ani": 77.0404, "matched_fragments": 274, "total_fragments": 2802, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter mali", "strain": "strain=G2-14", "accession": "GCA_013283875.1", "taxid": 2740462, "species_taxid": 2740462, "relation_to_type": "type", "validated": true, "ani": 76.9609, "matched_fragments": 277, "total_fragments": 2802, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter rubeus", "strain": "strain=CGMCC 1.15913", "accession": "GCA_014643835.1", "taxid": 2027860, "species_taxid": 2027860, "relation_to_type": "suspected-type", "validated": true, "ani": 76.9441, "matched_fragments": 287, "total_fragments": 2802, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter pedocola", "strain": "strain=TBZ30", "accession": "GCA_002013915.1", "taxid": 1792845, "species_taxid": 1792845, "relation_to_type": "type", "validated": true, "ani": 76.9064, "matched_fragments": 248, "total_fragments": 2802, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter pallidiroseus", "strain": "strain=dk17", "accession": "GCA_007846085.1", "taxid": 2599295, "species_taxid": 2599295, "relation_to_type": "type", "validated": true, "ani": 76.8909, "matched_fragments": 210, "total_fragments": 2802, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter yixingensis", "strain": "strain=DSM 26809", "accession": "GCA_003050755.1", "taxid": 1295612, "species_taxid": 1295612, "relation_to_type": "type", "validated": true, "ani": 76.8428, "matched_fragments": 203, "total_fragments": 2802, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter conchicola", "strain": "strain=MYSH2", "accession": "GCA_003432115.1", "taxid": 2303333, "species_taxid": 2303333, "relation_to_type": "type", "validated": true, "ani": 76.8308, "matched_fragments": 204, "total_fragments": 2802, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter gotjawali", "strain": "strain=CECT 8628", "accession": "GCA_014191635.1", "taxid": 1550579, "species_taxid": 1550579, "relation_to_type": "type", "validated": true, "ani": 76.792, "matched_fragments": 264, "total_fragments": 2802, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000166195.2", "gtdb_species": "s__Mucilaginibacter paludis", "ani": 100.0, "matched_fragments": 2802, "total_fragments": 2802, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", 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"mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013285685.1", "gtdb_species": "s__Mucilaginibacter sp013285685", "ani": 76.7941, "matched_fragments": 114, "total_fragments": 2802, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.26, "cell_length": 1.317, "doubling_h": null, "growth_tmp": 24.0, "optimum_tmp": 20.5, "optimum_ph": 6.233, "genome_size": 8408322.0, "gc_content": 42.89, "coding_genes": 5407.0, "rRNA16S_genes": 2.0, "tRNA_genes": 47.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 1.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Mucilaginibacter", "paludis", "DSM", "18603" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }