{ "type": "genome", "identifier": "GCF_000166295.1", "organism": "Marinobacter adhaerens HP15", "title": "Marinobacter adhaerens HP15", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Jacobs University gGmbH", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000166295.1", "bioproject": "PRJNA224116", "biosample": "SAMN00713638", "wgs_master": "na", "refseq_category": "na", "taxid": "225937", "species_taxid": "1033846", "organism_name": "Marinobacter adhaerens HP15", "infraspecific_name": "strain=HP15", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2010/11/09", "asm_name": "ASM16629v1", "asm_submitter": "Jacobs University gGmbH", "gbrs_paired_asm": "GCA_000166295.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/166/295/GCF_000166295.1_ASM16629v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4651725", "genome_size_ungapped": "4651725", "gc_percent": "57.000000", "replicon_count": "3", "scaffold_count": "3", "contig_count": "3", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000166295.1-RS_2024_11_26", "annotation_date": "2024-11-26", "total_gene_count": "4370", "protein_coding_gene_count": "4239", "non_coding_gene_count": "66", "pubmed_id": "21304739" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2010-11-09", "dateModified": "2010-11-09", "datePublished": "2010-11-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Marinobacter adhaerens HP15" ], "sample_taxid": [ "225937" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany" ], "sample_host_location_id": [], "data_size": "1.320 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": 15.0, "max": 15.0 }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4651725", "Number of Sequences": "3", "Longest Sequences (bp)": "4421911", "N50 (bp)": "4421911", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "56.9", "Number of CDSs": "4379", "Average Protein Length": "318.9", "Coding Ratio (%)": "90.1", "Number of rRNAs": "9", "Number of tRNAs": "51", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Marinobacter adhaerens", "strain": "strain=HP15", "accession": "GCA_000166295.1", "taxid": 1033846, "species_taxid": 1033846, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1548, "total_fragments": 1549, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Marinobacter flavimaris", "strain": "strain=KCTC 12185", "accession": "GCA_003363485.1", "taxid": 262076, "species_taxid": 262076, "relation_to_type": "type", "validated": true, "ani": 96.5865, "matched_fragments": 1195, "total_fragments": 1549, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Marinobacter flavimaris", "strain": "strain=LMG 23834", "accession": "GCA_002933295.1", "taxid": 262076, "species_taxid": 262076, "relation_to_type": "type", "validated": true, "ani": 96.5694, "matched_fragments": 1199, "total_fragments": 1549, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Marinobacter maroccanus", "strain": "strain=N4", "accession": "GCA_002933275.1", "taxid": 2055143, "species_taxid": 2055143, "relation_to_type": "type", "validated": true, "ani": 87.7616, "matched_fragments": 1120, "total_fragments": 1549, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter subterrani", "strain": "strain=JG233", "accession": "GCA_001045555.1", "taxid": 1658765, "species_taxid": 1658765, "relation_to_type": "type", "validated": true, "ani": 82.8391, "matched_fragments": 914, "total_fragments": 1549, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter guineae", "strain": "strain=M3B", "accession": "GCA_002744735.1", "taxid": 432303, "species_taxid": 432303, "relation_to_type": "type", "validated": true, "ani": 82.7307, "matched_fragments": 939, "total_fragments": 1549, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter gudaonensis", "strain": "strain=CGMCC 1.6294", "accession": "GCA_900115175.1", "taxid": 375760, "species_taxid": 375760, "relation_to_type": "type", "validated": true, "ani": 81.9379, "matched_fragments": 845, "total_fragments": 1549, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter similis", "strain": "strain=A3d10", "accession": "GCA_000830985.1", "taxid": 1420916, "species_taxid": 1420916, "relation_to_type": "type", "validated": true, "ani": 80.7428, "matched_fragments": 662, "total_fragments": 1549, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter goseongensis", "strain": "strain=KCTC 12515", "accession": "GCA_023156235.1", "taxid": 453838, "species_taxid": 453838, "relation_to_type": "type", "validated": true, "ani": 80.6587, "matched_fragments": 587, "total_fragments": 1549, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter arenosus", "strain": "strain=CAU 1620", "accession": "GCA_019264345.1", "taxid": 2856822, "species_taxid": 2856822, "relation_to_type": "type", "validated": true, "ani": 80.6298, "matched_fragments": 723, "total_fragments": 1549, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter koreensis", "strain": "strain=DSM 17924", "accession": "GCA_023156285.1", "taxid": 335974, "species_taxid": 335974, "relation_to_type": "type", "validated": true, "ani": 79.645, "matched_fragments": 597, "total_fragments": 1549, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter xestospongiae", "strain": "strain=JCM 17469", "accession": "GCA_023156385.1", "taxid": 994319, "species_taxid": 994319, "relation_to_type": "type", "validated": true, "ani": 78.7139, "matched_fragments": 436, "total_fragments": 1549, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000166295.1", "gtdb_species": "s__Marinobacter adhaerens", "ani": 100.0, "matched_fragments": 1548, "total_fragments": 1549, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter", "ani_circumscription_radius": 96.6719, "mean_intra_species_ani": "98.39", "min_intra_species_ani": "97.71", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.87", "num_clustered_genomes": 5, "status": "inconclusive" }, { "accession": "GCF_002933295.1", "gtdb_species": "s__Marinobacter flavimaris", "ani": 96.579, "matched_fragments": 1198, "total_fragments": 1549, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter", "ani_circumscription_radius": 96.6719, "mean_intra_species_ani": "97.80", "min_intra_species_ani": "96.90", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.83", "num_clustered_genomes": 14, "status": "-" }, { "accession": "GCF_900188315.1", "gtdb_species": "s__Marinobacter sp900188315", "ani": 95.8524, "matched_fragments": 1171, "total_fragments": 1549, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter", "ani_circumscription_radius": 95.8497, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "inconclusive" }, { "accession": "GCF_000235625.1", "gtdb_species": "s__Marinobacter manganoxydans_A", "ani": 95.1551, "matched_fragments": 1152, "total_fragments": 1549, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter", "ani_circumscription_radius": 96.5877, "mean_intra_species_ani": "97.20", "min_intra_species_ani": "96.90", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.80", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_900188435.1", "gtdb_species": "s__Marinobacter sp900188435", "ani": 89.6157, "matched_fragments": 1108, "total_fragments": 1549, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001650915.1", "gtdb_species": "s__Marinobacter sp001650915", "ani": 88.6242, "matched_fragments": 1173, "total_fragments": 1549, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.33", "min_intra_species_ani": "97.47", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.86", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_003030785.1", "gtdb_species": "s__Marinobacter sp003030785", "ani": 87.1614, "matched_fragments": 630, "total_fragments": 1549, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009617755.1", "gtdb_species": "s__Marinobacter salsuginis", "ani": 86.9009, "matched_fragments": 1173, "total_fragments": 1549, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.38", "min_intra_species_ani": "96.64", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.80", "num_clustered_genomes": 12, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.222, "cell_length": 0.23, "doubling_h": -0.125, "growth_tmp": 35.0, "optimum_tmp": 36.0, "optimum_ph": 7.875, "genome_size": 4651723.75, "gc_content": 56.822, "coding_genes": 4264.667, "rRNA16S_genes": 3.0, "tRNA_genes": 51.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.96, "range_salinity": 1.0, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Marinobacter", "adhaerens", "HP15" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }