{
    "type": "genome",
    "identifier": "GCF_000167095.1",
    "organism": "Actinobacillus pleuropneumoniae serovar 1 str. 4074",
    "title": "Actinobacillus pleuropneumoniae serovar 1 str. 4074",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Univ. Oklahoma",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000167095.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02471910",
        "wgs_master": "AACK00000000.1",
        "refseq_category": "na",
        "taxid": "228399",
        "species_taxid": "715",
        "organism_name": "Actinobacillus pleuropneumoniae serovar 1 str. 4074",
        "infraspecific_name": "strain=4074",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2003/04/21",
        "asm_name": "ASM16709v1",
        "asm_submitter": "Univ. Oklahoma",
        "gbrs_paired_asm": "GCA_000167095.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/167/095/GCF_000167095.1_ASM16709v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2292348",
        "genome_size_ungapped": "2292237",
        "gc_percent": "41.500000",
        "replicon_count": "0",
        "scaffold_count": "140",
        "contig_count": "140",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000167095.1-RS_2024_04_03",
        "annotation_date": "2024-04-03",
        "total_gene_count": "2240",
        "protein_coding_gene_count": "1998",
        "non_coding_gene_count": "66",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2003-04-21",
    "dateModified": "2003-04-21",
    "datePublished": "2003-04-21",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Actinobacillus pleuropneumoniae serovar 1 str. 4074"
        ],
        "sample_taxid": [
            "228399"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "0.651 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2291990",
        "Number of Sequences": "138",
        "Longest Sequences (bp)": "104676",
        "N50 (bp)": "47478",
        "Gap Ratio (%)": "0.012522",
        "GCcontent (%)": "41.4",
        "Number of CDSs": "2150",
        "Average Protein Length": "304.6",
        "Coding Ratio (%)": "85.7",
        "Number of rRNAs": "11",
        "Number of tRNAs": "45",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Actinobacillus pleuropneumoniae",
                "strain": "strain=4074",
                "accession": "GCA_000167095.1",
                "taxid": 715,
                "species_taxid": 715,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 704,
                "total_fragments": 713,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Actinobacillus pleuropneumoniae",
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                "accession": "GCA_003290385.1",
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                "species_taxid": 715,
                "relation_to_type": "type",
                "validated": true,
                "ani": 98.3377,
                "matched_fragments": 673,
                "total_fragments": 713,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Actinobacillus pleuropneumoniae",
                "strain": "strain=4074",
                "accession": "GCA_000178495.2",
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                "species_taxid": 715,
                "relation_to_type": "type",
                "validated": true,
                "ani": 98.3372,
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                "total_fragments": 713,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Actinobacillus lignieresii",
                "strain": "strain=NCTC4189",
                "accession": "GCA_900444945.1",
                "taxid": 720,
                "species_taxid": 720,
                "relation_to_type": "type",
                "validated": true,
                "ani": 96.3253,
                "matched_fragments": 649,
                "total_fragments": 713,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Actinobacillus suis",
                "strain": "strain=ATCC 33415",
                "accession": "GCA_000739435.1",
                "taxid": 716,
                "species_taxid": 716,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.8091,
                "matched_fragments": 561,
                "total_fragments": 713,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinobacillus suis",
                "strain": "strain=NCTC12996",
                "accession": "GCA_900187155.1",
                "taxid": 716,
                "species_taxid": 716,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.7503,
                "matched_fragments": 564,
                "total_fragments": 713,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinobacillus equuli",
                "strain": "strain=NCTC8529",
                "accession": "GCA_900636745.1",
                "taxid": 718,
                "species_taxid": 718,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.0278,
                "matched_fragments": 553,
                "total_fragments": 713,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rodentibacter haemolyticus",
                "strain": "strain=DSM 111151",
                "accession": "GCA_015356115.1",
                "taxid": 2778911,
                "species_taxid": 2778911,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1931,
                "matched_fragments": 150,
                "total_fragments": 713,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900444945.1",
                "gtdb_species": "s__Actinobacillus lignieresii",
                "ani": 96.3253,
                "matched_fragments": 649,
                "total_fragments": 713,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Actinobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.69",
                "min_intra_species_ani": "96.41",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 35,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000739435.1",
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                "ani": 88.802,
                "matched_fragments": 562,
                "total_fragments": 713,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Actinobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.85",
                "min_intra_species_ani": "99.75",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCF_900636745.1",
                "gtdb_species": "s__Actinobacillus equuli",
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                "matched_fragments": 553,
                "total_fragments": 713,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Actinobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.82",
                "min_intra_species_ani": "97.64",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000188255.1",
                "gtdb_species": "s__Actinobacillus ureae",
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                "total_fragments": 713,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Actinobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.22",
                "min_intra_species_ani": "99.21",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000374285.1",
                "gtdb_species": "s__Actinobacillus capsulatus",
                "ani": 87.322,
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                "total_fragments": 713,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Actinobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_901687125.1",
                "gtdb_species": "s__Actinobacillus vicugnae",
                "ani": 81.4503,
                "matched_fragments": 475,
                "total_fragments": 713,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Actinobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.17,
        "cell_length": 0.02,
        "doubling_h": -0.125,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.0,
        "optimum_ph": null,
        "genome_size": 2283531.405,
        "gc_content": 41.478,
        "coding_genes": 2075.333,
        "rRNA16S_genes": 5.4,
        "tRNA_genes": 62.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 0.0,
        "facultative_respiration": 1.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Actinobacillus",
        "pleuropneumoniae",
        "serovar",
        "1",
        "str.",
        "4074"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}