{
    "type": "genome",
    "identifier": "GCF_000169235.1",
    "organism": "Dorea formicigenerans ATCC 27755",
    "title": "Dorea formicigenerans ATCC 27755",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Washington University Genome Sequencing Center",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000169235.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN00000008",
        "wgs_master": "AAXA00000000.2",
        "refseq_category": "na",
        "taxid": "411461",
        "species_taxid": "39486",
        "organism_name": "Dorea formicigenerans ATCC 27755",
        "infraspecific_name": "strain=ATCC 27755",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2007/10/10",
        "asm_name": "ASM16923v1",
        "asm_submitter": "Washington University Genome Sequencing Center",
        "gbrs_paired_asm": "GCA_000169235.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/169/235/GCF_000169235.1_ASM16923v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3186031",
        "genome_size_ungapped": "3186031",
        "gc_percent": "41.000000",
        "replicon_count": "0",
        "scaffold_count": "16",
        "contig_count": "16",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000169235.1-RS_2024_04_07",
        "annotation_date": "2024-04-07",
        "total_gene_count": "3120",
        "protein_coding_gene_count": "2981",
        "non_coding_gene_count": "79",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2007-10-10",
    "dateModified": "2007-10-10",
    "datePublished": "2007-10-10",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Dorea formicigenerans ATCC 27755"
        ],
        "sample_taxid": [
            "411461"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not determined"
        ],
        "sample_host_location_id": [],
        "data_size": "0.898 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3186031",
        "Number of Sequences": "16",
        "Longest Sequences (bp)": "957115",
        "N50 (bp)": "318591",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "41.0",
        "Number of CDSs": "3065",
        "Average Protein Length": "303.9",
        "Coding Ratio (%)": "87.7",
        "Number of rRNAs": "18",
        "Number of tRNAs": "53",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Dorea formicigenerans",
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                "relation_to_type": "suspected-type",
                "validated": true,
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                "status": "conclusive"
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            {
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            },
            {
                "organism_name": "Coprococcus comes",
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                "species_taxid": 410072,
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                "status": "below_threshold"
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            {
                "organism_name": "[Ruminococcus] gnavus",
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                "species_taxid": 33038,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Eubacterium ramulus",
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                "ani": 80.7435,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Dorea longicatena",
                "strain": "strain=DSM 13814",
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                "taxid": 88431,
                "species_taxid": 88431,
                "relation_to_type": "type",
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                "ani": 80.648,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Suipraeoptans intestinalis",
                "strain": "strain=68-1-5",
                "accession": "GCA_009696485.1",
                "taxid": 2606628,
                "species_taxid": 2606628,
                "relation_to_type": "type",
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                "ani_threshold": 95,
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            },
            {
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                "accession": "GCA_000154065.1",
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            },
            {
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                "accession": "GCA_025152405.1",
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                "species_taxid": 46228,
                "relation_to_type": "type",
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            },
            {
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "[Ruminococcus] torques",
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                "taxid": 2040291,
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                "ani_threshold": 95,
                "status": "below_threshold"
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                "accession": "GCA_024160205.1",
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                "accession": "GCA_008691045.1",
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}