{
    "type": "genome",
    "identifier": "GCF_000169415.1",
    "organism": "Sagittula stellata E-37",
    "title": "Sagittula stellata E-37",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Gordon and Betty Moore Foundation Microbial Genome Sequencing Project",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000169415.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02436093",
        "wgs_master": "AAYA00000000.1",
        "refseq_category": "na",
        "taxid": "388399",
        "species_taxid": "52603",
        "organism_name": "Sagittula stellata E-37",
        "infraspecific_name": "strain=E-37",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2007/03/07",
        "asm_name": "ASM16941v1",
        "asm_submitter": "Gordon and Betty Moore Foundation Microbial Genome Sequencing Project",
        "gbrs_paired_asm": "GCA_000169415.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/169/415/GCF_000169415.1_ASM16941v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5262893",
        "genome_size_ungapped": "5262893",
        "gc_percent": "65.000000",
        "replicon_count": "0",
        "scaffold_count": "39",
        "contig_count": "39",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2024-02-16",
        "total_gene_count": "5029",
        "protein_coding_gene_count": "4890",
        "non_coding_gene_count": "55",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2007-03-07",
    "dateModified": "2007-03-07",
    "datePublished": "2007-03-07",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Sagittula stellata E-37"
        ],
        "sample_taxid": [
            "388399"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "1.458 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5262893",
        "Number of Sequences": "39",
        "Longest Sequences (bp)": "574813",
        "N50 (bp)": "317878",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "65.0",
        "Number of CDSs": "5007",
        "Average Protein Length": "309.5",
        "Coding Ratio (%)": "88.3",
        "Number of rRNAs": "6",
        "Number of tRNAs": "53",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Salipiger thiooxidans",
                "strain": "strain=DSM 10146",
                "accession": "GCA_900102075.1",
                "taxid": 282683,
                "species_taxid": 282683,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.9296,
                "matched_fragments": 743,
                "total_fragments": 1734,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mameliella alba",
                "strain": "strain=DSM 26384",
                "accession": "GCA_003051025.1",
                "taxid": 561184,
                "species_taxid": 561184,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 79.8021,
                "matched_fragments": 800,
                "total_fragments": 1734,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mameliella alba",
                "strain": "strain=CGMCC 1.7290",
                "accession": "GCA_900101505.1",
                "taxid": 561184,
                "species_taxid": 561184,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 79.7902,
                "matched_fragments": 796,
                "total_fragments": 1734,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Salipiger profundus",
                "strain": "strain=JLT2016",
                "accession": "GCA_001969385.1",
                "taxid": 1229727,
                "species_taxid": 1229727,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.5232,
                "matched_fragments": 671,
                "total_fragments": 1734,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Salipiger bermudensis",
                "strain": "strain=HTCC2601",
                "accession": "GCA_000153725.1",
                "taxid": 344736,
                "species_taxid": 344736,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.42,
                "matched_fragments": 672,
                "total_fragments": 1734,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sagittula marina",
                "strain": "strain=DSM 102235",
                "accession": "GCA_014196795.1",
                "taxid": 943940,
                "species_taxid": 943940,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.3982,
                "matched_fragments": 664,
                "total_fragments": 1734,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Salipiger profundus",
                "strain": "strain=CGMCC 1.12377",
                "accession": "GCA_014637265.1",
                "taxid": 1229727,
                "species_taxid": 1229727,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.3685,
                "matched_fragments": 655,
                "total_fragments": 1734,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Salipiger pallidus",
                "strain": "strain=CGMCC 1.15762",
                "accession": "GCA_014643635.1",
                "taxid": 1775170,
                "species_taxid": 1775170,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.1243,
                "matched_fragments": 536,
                "total_fragments": 1734,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Yangia pacifica",
                "strain": "strain=CGMCC 1.3455",
                "accession": "GCA_900100725.1",
                "taxid": 311180,
                "species_taxid": 311180,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 78.9878,
                "matched_fragments": 671,
                "total_fragments": 1734,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mameliella sediminis",
                "strain": "strain=DP3N28-2",
                "accession": "GCA_019218285.1",
                "taxid": 2836866,
                "species_taxid": 2836866,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9832,
                "matched_fragments": 644,
                "total_fragments": 1734,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Yangia pacifica",
                "strain": "strain=DSM 26894",
                "accession": "GCA_900116195.1",
                "taxid": 311180,
                "species_taxid": 311180,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 78.9518,
                "matched_fragments": 678,
                "total_fragments": 1734,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseivivax lentus",
                "strain": "strain=DSM 29430",
                "accession": "GCA_900156805.1",
                "taxid": 633194,
                "species_taxid": 633194,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9198,
                "matched_fragments": 549,
                "total_fragments": 1734,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Salipiger marinus",
                "strain": "strain=DSM 26424",
                "accession": "GCA_900100085.1",
                "taxid": 555512,
                "species_taxid": 555512,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8319,
                "matched_fragments": 612,
                "total_fragments": 1734,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseivivax marinus",
                "strain": "strain=DSM 27511",
                "accession": "GCA_900109705.1",
                "taxid": 1379903,
                "species_taxid": 1379903,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7659,
                "matched_fragments": 529,
                "total_fragments": 1734,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseivivax isoporae",
                "strain": "strain=LMG 25204",
                "accession": "GCA_000521865.1",
                "taxid": 591206,
                "species_taxid": 591206,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6679,
                "matched_fragments": 595,
                "total_fragments": 1734,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseivivax halodurans",
                "strain": "strain=JCM 10272",
                "accession": "GCA_000521785.1",
                "taxid": 93683,
                "species_taxid": 93683,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4456,
                "matched_fragments": 491,
                "total_fragments": 1734,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Marivivens aquimaris",
                "strain": "strain=GSB7",
                "accession": "GCA_015220045.1",
                "taxid": 2774876,
                "species_taxid": 2774876,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3619,
                "matched_fragments": 295,
                "total_fragments": 1734,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cereibacter sediminicola",
                "strain": "strain=JA983",
                "accession": "GCA_007668225.1",
                "taxid": 2584941,
                "species_taxid": 2584941,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0883,
                "matched_fragments": 363,
                "total_fragments": 1734,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000169415.1",
                "gtdb_species": "s__Sagittula stellata",
                "ani": 100.0,
                "matched_fragments": 1730,
                "total_fragments": 1734,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Sagittula",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_002814095.1",
                "gtdb_species": "s__Sagittula sp002814095",
                "ani": 89.4345,
                "matched_fragments": 1368,
                "total_fragments": 1734,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Sagittula",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016806125.1",
                "gtdb_species": "s__AWRV01 sp000504185",
                "ani": 81.05,
                "matched_fragments": 878,
                "total_fragments": 1734,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__AWRV01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.97",
                "min_intra_species_ani": "99.97",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_017255395.1",
                "gtdb_species": "s__AWRV01 sp017255395",
                "ani": 80.6492,
                "matched_fragments": 827,
                "total_fragments": 1734,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__AWRV01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_017813235.1",
                "gtdb_species": "s__Sagittula sp017813235",
                "ani": 80.1994,
                "matched_fragments": 842,
                "total_fragments": 1734,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Sagittula",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900102075.1",
                "gtdb_species": "s__Salipiger thiooxidans",
                "ani": 79.9174,
                "matched_fragments": 744,
                "total_fragments": 1734,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Salipiger",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.34",
                "min_intra_species_ani": "95.88",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCF_001482405.1",
                "gtdb_species": "s__Ponticoccus marisrubri",
                "ani": 79.8543,
                "matched_fragments": 762,
                "total_fragments": 1734,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Ponticoccus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003667315.2",
                "gtdb_species": "s__Tropicibacter sp003667315",
                "ani": 79.8019,
                "matched_fragments": 741,
                "total_fragments": 1734,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Tropicibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900107235.1",
                "gtdb_species": "s__Citreimonas salinaria",
                "ani": 79.4907,
                "matched_fragments": 564,
                "total_fragments": 1734,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Citreimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000153725.1",
                "gtdb_species": "s__Salipiger bermudensis",
                "ani": 79.4121,
                "matched_fragments": 669,
                "total_fragments": 1734,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Salipiger",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.06",
                "min_intra_species_ani": "97.75",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.75",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_014196795.1",
                "gtdb_species": "s__Sagittula marina",
                "ani": 79.3924,
                "matched_fragments": 667,
                "total_fragments": 1734,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Sagittula",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_017311415.1",
                "gtdb_species": "s__Salipiger abyssi_A",
                "ani": 79.1293,
                "matched_fragments": 601,
                "total_fragments": 1734,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Salipiger",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001975705.1",
                "gtdb_species": "s__Salipiger abyssi",
                "ani": 79.0067,
                "matched_fragments": 619,
                "total_fragments": 1734,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Salipiger",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_019218285.1",
                "gtdb_species": "s__DP3N28-2 sp019218285",
                "ani": 78.9763,
                "matched_fragments": 645,
                "total_fragments": 1734,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__DP3N28-2",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000521865.1",
                "gtdb_species": "s__Roseivivax isoporae",
                "ani": 78.6739,
                "matched_fragments": 593,
                "total_fragments": 1734,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Roseivivax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.302,
        "cell_length": 0.0,
        "doubling_h": null,
        "growth_tmp": 29.0,
        "optimum_tmp": 25.0,
        "optimum_ph": 7.5,
        "genome_size": 5262893.0,
        "gc_content": 65.0,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Sagittula",
        "stellata",
        "E-37"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}