{ "type": "genome", "identifier": "GCF_000170495.1", "organism": "Burkholderia humptydooensis MSMB43", "title": "Burkholderia humptydooensis MSMB43", "description": "na", "data type": "Genome sequencing and assembly", "organization": "NMRC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000170495.1", "bioproject": "PRJNA224116", "biosample": "SAMN02470669", "wgs_master": "ABBM00000000.1", "refseq_category": "na", "taxid": "441157", "species_taxid": "430531", "organism_name": "Burkholderia humptydooensis MSMB43", "infraspecific_name": "strain=MSMB43", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2007/06/06", "asm_name": "ASM17049v1", "asm_submitter": "NMRC", "gbrs_paired_asm": "GCA_000170495.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/170/495/GCF_000170495.1_ASM17049v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6956166", "genome_size_ungapped": "6956166", "gc_percent": "67.000000", "replicon_count": "0", "scaffold_count": "1230", "contig_count": "1230", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2023-09-14", "total_gene_count": "7175", "protein_coding_gene_count": "6384", "non_coding_gene_count": "58", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2007-06-06", "dateModified": "2007-06-06", "datePublished": "2007-06-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Burkholderia humptydooensis MSMB43" ], "sample_taxid": [ "441157" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.893 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6956166", "Number of Sequences": "1230", "Longest Sequences (bp)": "75205", "N50 (bp)": "10843", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.0", "Number of CDSs": "5323", "Average Protein Length": "301.5", "Coding Ratio (%)": "69.2", "Number of rRNAs": "2", "Number of tRNAs": "65", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Burkholderia thailandensis", "strain": "strain=E264; ATCC 700388", "accession": "GCA_000012365.1", "taxid": 57975, "species_taxid": 57975, "relation_to_type": "type", "validated": true, "ani": 93.1513, "matched_fragments": 1297, 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"status": "below_threshold" }, { "organism_name": "Burkholderia pseudomallei", "strain": "strain=ATCC 23343", "accession": "GCA_001182285.1", "taxid": 28450, "species_taxid": 28450, "relation_to_type": "type", "validated": true, "ani": 92.5938, "matched_fragments": 1317, "total_fragments": 1722, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia mallei", "strain": "strain=NCTC12938", "accession": "GCA_900446245.1", "taxid": 13373, "species_taxid": 13373, "relation_to_type": "type", "validated": true, "ani": 92.1718, "matched_fragments": 1164, "total_fragments": 1722, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia mallei", "strain": "strain=ATCC 23344", "accession": "GCA_000011705.1", "taxid": 13373, "species_taxid": 13373, "relation_to_type": "type", "validated": true, "ani": 92.0769, "matched_fragments": 1170, "total_fragments": 1722, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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