{ "type": "genome", "identifier": "GCF_000170835.1", "organism": "Marinobacter algicola DG893", "title": "Marinobacter algicola DG893", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Moore Foundation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000170835.1", "bioproject": "PRJNA224116", "biosample": "SAMN02436149", "wgs_master": "ABCP00000000.1", "refseq_category": "reference genome", "taxid": "443152", "species_taxid": "236100", "organism_name": "Marinobacter algicola DG893", "infraspecific_name": "strain=DG893", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2007/06/21", "asm_name": "ASM17083v1", "asm_submitter": "Moore Foundation", "gbrs_paired_asm": "GCA_000170835.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/170/835/GCF_000170835.1_ASM17083v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4413003", "genome_size_ungapped": "4413003", "gc_percent": "57.000000", "replicon_count": "0", "scaffold_count": "104", "contig_count": "104", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000170835.1-RS_2024_04_22", "annotation_date": "2024-04-22", "total_gene_count": "4096", "protein_coding_gene_count": "3999", "non_coding_gene_count": "56", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2007-06-21", "dateModified": "2007-06-21", "datePublished": "2007-06-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Marinobacter algicola DG893" ], "sample_taxid": [ "443152" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.260 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4412751", "Number of Sequences": "102", "Longest Sequences (bp)": "494029", "N50 (bp)": "79366", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "57.0", "Number of CDSs": "4043", "Average Protein Length": "327.9", "Coding Ratio (%)": "90.1", "Number of rRNAs": "5", "Number of tRNAs": "45", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Marinobacter algicola", "strain": "strain=DG893", "accession": "GCA_000170835.1", "taxid": 236100, "species_taxid": 236100, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1417, "total_fragments": 1423, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Marinobacter denitrificans", "strain": "strain=JB02H27", "accession": "GCA_008795955.1", "taxid": 2597703, "species_taxid": 2597703, "relation_to_type": "type", "validated": true, "ani": 82.0621, "matched_fragments": 858, "total_fragments": 1423, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter orientalis", "strain": "strain=W62", "accession": "GCA_012956055.1", "taxid": 1928859, "species_taxid": 1928859, "relation_to_type": "type", "validated": true, "ani": 81.6531, "matched_fragments": 706, "total_fragments": 1423, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter orientalis", "strain": "strain=W62", "accession": "GCA_004792665.1", "taxid": 1928859, "species_taxid": 1928859, "relation_to_type": "type", "validated": true, "ani": 81.5404, "matched_fragments": 682, "total_fragments": 1423, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter vulgaris", "strain": "strain=F01", "accession": "GCA_007559285.1", "taxid": 1928331, "species_taxid": 1928331, "relation_to_type": "type", "validated": true, "ani": 81.4604, "matched_fragments": 701, "total_fragments": 1423, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter vulgaris", "strain": "strain=F01", "accession": "GCA_003344045.1", "taxid": 1928331, "species_taxid": 1928331, "relation_to_type": "type", "validated": true, "ani": 81.3688, "matched_fragments": 703, "total_fragments": 1423, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter similis", "strain": "strain=A3d10", "accession": "GCA_000830985.1", "taxid": 1420916, "species_taxid": 1420916, "relation_to_type": "type", "validated": true, "ani": 79.9824, "matched_fragments": 521, "total_fragments": 1423, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter flavimaris", "strain": "strain=LMG 23834", "accession": "GCA_002933295.1", "taxid": 262076, "species_taxid": 262076, "relation_to_type": "type", "validated": true, "ani": 79.8171, "matched_fragments": 562, "total_fragments": 1423, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter goseongensis", "strain": "strain=KCTC 12515", "accession": "GCA_023156235.1", "taxid": 453838, "species_taxid": 453838, "relation_to_type": "type", "validated": true, "ani": 79.8047, "matched_fragments": 564, "total_fragments": 1423, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter subterrani", "strain": "strain=JG233", "accession": "GCA_001045555.1", "taxid": 1658765, "species_taxid": 1658765, "relation_to_type": "type", "validated": true, "ani": 79.7814, "matched_fragments": 579, "total_fragments": 1423, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter halotolerans", "strain": "strain=NBRC 110910", "accession": "GCA_008795985.1", "taxid": 1569211, 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