{ "type": "genome", "identifier": "GCF_000172155.1", "organism": "Verrucomicrobium spinosum DSM 4136 = JCM 18804", "title": "Verrucomicrobium spinosum DSM 4136 = JCM 18804", "description": "na", "data type": "Genome sequencing and assembly", "organization": "TIGR", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000172155.1", "bioproject": "PRJNA224116", "biosample": "SAMN02436175", "wgs_master": "ABIZ00000000.1", "refseq_category": "reference genome", "taxid": "240016", "species_taxid": "2736", "organism_name": "Verrucomicrobium spinosum DSM 4136 = JCM 18804", "infraspecific_name": "strain=DSM 4136", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2008/01/02", "asm_name": "ASM17215v1", "asm_submitter": "TIGR", "gbrs_paired_asm": "GCA_000172155.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/172/155/GCF_000172155.1_ASM17215v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8220857", "genome_size_ungapped": "8220857", "gc_percent": "60.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000172155.1-RS_2024_05_05", "annotation_date": "2024-05-05", "total_gene_count": "6286", "protein_coding_gene_count": "6150", "non_coding_gene_count": "78", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2008-01-02", "dateModified": "2008-01-02", "datePublished": "2008-01-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Verrucomicrobium spinosum DSM 4136 = JCM 18804" ], "sample_taxid": [ "240016" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "2.301 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8220857", "Number of Sequences": "1", "Longest Sequences (bp)": "8220857", "N50 (bp)": "8220857", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "60.3", "Number of CDSs": "6297", "Average Protein Length": "370.7", "Coding Ratio (%)": "85.2", "Number of rRNAs": "12", "Number of tRNAs": "68", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Verrucomicrobium spinosum", "strain": "strain=DSM 4136", "accession": "GCA_000172155.1", "taxid": 2736, "species_taxid": 2736, "relation_to_type": 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2740, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prosthecobacter fusiformis", "strain": "strain=ATCC 25309", "accession": "GCA_004364345.1", "taxid": 48464, "species_taxid": 48464, "relation_to_type": "type", "validated": true, "ani": 76.2776, "matched_fragments": 189, "total_fragments": 2740, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000172155.1", "gtdb_species": "s__Verrucomicrobium spinosum", "ani": 100.0, "matched_fragments": 2740, "total_fragments": 2740, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Verrucomicrobiaceae;g__Verrucomicrobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.88", "min_intra_species_ani": "99.88", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "conclusive" }, { 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