{
    "type": "genome",
    "identifier": "GCF_000173075.1",
    "organism": "Chthoniobacter flavus Ellin428",
    "title": "Chthoniobacter flavus Ellin428",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "US DOE Joint Genome Institute (JGI-PGF)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000173075.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN00000678",
        "wgs_master": "ABVL00000000.1",
        "refseq_category": "na",
        "taxid": "497964",
        "species_taxid": "191863",
        "organism_name": "Chthoniobacter flavus Ellin428",
        "infraspecific_name": "strain=Ellin428",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2008/08/15",
        "asm_name": "ASM17307v1",
        "asm_submitter": "US DOE Joint Genome Institute (JGI-PGF)",
        "gbrs_paired_asm": "GCA_000173075.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/173/075/GCF_000173075.1_ASM17307v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "7848700",
        "genome_size_ungapped": "7848640",
        "gc_percent": "61.000000",
        "replicon_count": "0",
        "scaffold_count": "62",
        "contig_count": "62",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000173075.1-RS_2024_03_20",
        "annotation_date": "2024-03-20",
        "total_gene_count": "6648",
        "protein_coding_gene_count": "6525",
        "non_coding_gene_count": "65",
        "pubmed_id": "21460085"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2008-08-15",
    "dateModified": "2008-08-15",
    "datePublished": "2008-08-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Chthoniobacter flavus Ellin428"
        ],
        "sample_taxid": [
            "497964"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "2.202 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "7848700",
        "Number of Sequences": "62",
        "Longest Sequences (bp)": "675211",
        "N50 (bp)": "268902",
        "Gap Ratio (%)": "0.000790",
        "GCcontent (%)": "61.1",
        "Number of CDSs": "6577",
        "Average Protein Length": "347.8",
        "Coding Ratio (%)": "87.4",
        "Number of rRNAs": "4",
        "Number of tRNAs": "64",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Chthoniobacter flavus",
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            },
            {
                "organism_name": "Chthoniobacter flavus",
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                "validated": true,
                "ani": 99.9533,
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                "total_fragments": 2583,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Terrimicrobium sacchariphilum",
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                "accession": "GCA_001613545.1",
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                "species_taxid": 690879,
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
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                "validated": true,
                "ani": 75.8724,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Prosthecobacter vanneervenii",
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                "accession": "GCA_014203095.1",
                "taxid": 48466,
                "species_taxid": 48466,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.6902,
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                "total_fragments": 2583,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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                "accession": "GCF_000173075.1",
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                "mean_intra_species_ani": "N/A",
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    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}