{ "type": "genome", "identifier": "GCF_000173755.1", "organism": "Yersinia ruckeri ATCC 29473", "title": "Yersinia ruckeri ATCC 29473", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Naval Medical Research Center", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000173755.1", "bioproject": "PRJNA224116", "biosample": "SAMN00005359", "wgs_master": "ACCC00000000.1", "refseq_category": "na", "taxid": "527005", "species_taxid": "29486", "organism_name": "Yersinia ruckeri ATCC 29473", "infraspecific_name": "strain=ATCC 29473", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2009/06/01", "asm_name": "ASM17375v1", "asm_submitter": "Naval Medical Research Center", "gbrs_paired_asm": "GCA_000173755.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/173/755/GCF_000173755.1_ASM17375v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3739990", "genome_size_ungapped": "3739990", "gc_percent": "47.500000", "replicon_count": "0", "scaffold_count": "174", "contig_count": "174", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000173755.1-RS_2024_05_15", "annotation_date": "2024-05-15", "total_gene_count": "3421", "protein_coding_gene_count": "3251", "non_coding_gene_count": "65", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2009-06-01", "dateModified": "2009-06-01", "datePublished": "2009-06-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Yersinia ruckeri ATCC 29473" ], "sample_taxid": [ "527005" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.072 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3734836", "Number of Sequences": "139", "Longest Sequences (bp)": "243321", "N50 (bp)": "79318", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "47.4", "Number of CDSs": "3270", "Average Protein Length": "317.1", "Coding Ratio (%)": "83.3", "Number of rRNAs": "1", "Number of tRNAs": "47", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Yersinia ruckeri", "strain": "strain=ATCC 29473", "accession": "GCA_000173755.1", "taxid": 29486, "species_taxid": 29486, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1184, "total_fragments": 1192, 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intermedia", "strain": "strain=NCTC11469", "accession": "GCA_900635455.1", "taxid": 631, "species_taxid": 631, "relation_to_type": "type", "validated": true, "ani": 81.137, "matched_fragments": 626, "total_fragments": 1192, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yersinia aldovae", "strain": "strain=IP06005", "accession": "GCA_001091225.1", "taxid": 29483, "species_taxid": 29483, "relation_to_type": "type", "validated": true, "ani": 80.9649, "matched_fragments": 617, "total_fragments": 1192, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yersinia mollaretii", "strain": "strain=ATCC 43969", "accession": "GCA_013282725.1", "taxid": 33060, "species_taxid": 33060, "relation_to_type": "type", "validated": true, "ani": 80.9255, "matched_fragments": 609, "total_fragments": 1192, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yersinia kristensenii", "strain": "strain=ATCC 33638", "accession": "GCA_000173715.1", 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