{
    "type": "genome",
    "identifier": "GCF_000173975.1",
    "organism": "Anaerobutyricum hallii DSM 3353",
    "title": "Anaerobutyricum hallii DSM 3353",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Washington University Genome Sequencing Center",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000173975.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02415618",
        "wgs_master": "ACEP00000000.1",
        "refseq_category": "na",
        "taxid": "411469",
        "species_taxid": "39488",
        "organism_name": "Anaerobutyricum hallii DSM 3353",
        "infraspecific_name": "strain=DSM 3353",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2009/02/03",
        "asm_name": "ASM17397v1",
        "asm_submitter": "Washington University Genome Sequencing Center",
        "gbrs_paired_asm": "GCA_000173975.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/173/975/GCF_000173975.1_ASM17397v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3290996",
        "genome_size_ungapped": "3290996",
        "gc_percent": "38.000000",
        "replicon_count": "0",
        "scaffold_count": "175",
        "contig_count": "175",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2024-02-28",
        "total_gene_count": "3023",
        "protein_coding_gene_count": "2847",
        "non_coding_gene_count": "70",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2009-02-03",
    "dateModified": "2009-02-03",
    "datePublished": "2009-02-03",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Anaerobutyricum hallii DSM 3353"
        ],
        "sample_taxid": [
            "411469"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not determined"
        ],
        "sample_host_location_id": [],
        "data_size": "0.930 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3290996",
        "Number of Sequences": "175",
        "Longest Sequences (bp)": "194898",
        "N50 (bp)": "33110",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "38.2",
        "Number of CDSs": "2873",
        "Average Protein Length": "315.3",
        "Coding Ratio (%)": "82.6",
        "Number of rRNAs": "0",
        "Number of tRNAs": "62",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Anaerobutyricum hallii",
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                "taxid": 39488,
                "species_taxid": 39488,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1010,
                "total_fragments": 1015,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Dorea formicigenerans",
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                "accession": "GCA_000169235.1",
                "taxid": 39486,
                "species_taxid": 39486,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 81.1006,
                "matched_fragments": 94,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dorea formicigenerans",
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                "accession": "GCA_025150245.1",
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                "matched_fragments": 85,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Faecalicatena faecalis",
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                "species_taxid": 2726362,
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
                "organism_name": "Anaerostipes hadrus",
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                "species_taxid": 649756,
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                "matched_fragments": 125,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "[Ruminococcus] lactaris",
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                "accession": "GCA_000155205.1",
                "taxid": 46228,
                "species_taxid": 46228,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
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                "organism_name": "Lachnospira eligens",
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            {
                "organism_name": "[Ruminococcus] lactaris",
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            {
                "organism_name": "[Ruminococcus] gnavus",
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                "species_taxid": 33038,
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            {
                "organism_name": "Anaerostipes faecalis",
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                "species_taxid": 2738446,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
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            },
            {
                "organism_name": "Anaerostipes butyraticus",
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                "status": "below_threshold"
            }
        ],
        "cc_result": {
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}