{
    "type": "genome",
    "identifier": "GCF_000174435.1",
    "organism": "Desulfonatronospira thiodismutans ASO3-1",
    "title": "Desulfonatronospira thiodismutans ASO3-1",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "US DOE Joint Genome Institute (JGI-PGF)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000174435.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02441800",
        "wgs_master": "ACJN00000000.2",
        "refseq_category": "reference genome",
        "taxid": "555779",
        "species_taxid": "488939",
        "organism_name": "Desulfonatronospira thiodismutans ASO3-1",
        "infraspecific_name": "strain=ASO3-1",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2010/06/17",
        "asm_name": "ASM17443v1",
        "asm_submitter": "US DOE Joint Genome Institute (JGI-PGF)",
        "gbrs_paired_asm": "GCA_000174435.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/174/435/GCF_000174435.1_ASM17443v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4107394",
        "genome_size_ungapped": "4107346",
        "gc_percent": "51.500000",
        "replicon_count": "0",
        "scaffold_count": "5",
        "contig_count": "5",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000174435.1-RS_2024_07_03",
        "annotation_date": "2024-07-03",
        "total_gene_count": "3874",
        "protein_coding_gene_count": "3767",
        "non_coding_gene_count": "59",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2010-06-17",
    "dateModified": "2010-06-17",
    "datePublished": "2010-06-17",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Desulfonatronospira thiodismutans ASO3-1"
        ],
        "sample_taxid": [
            "555779"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [
            "None"
        ],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Russia: Altai"
        ],
        "sample_host_location_id": [],
        "data_size": "1.147 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 1.39,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4107394",
        "Number of Sequences": "5",
        "Longest Sequences (bp)": "1372309",
        "N50 (bp)": "1172362",
        "Gap Ratio (%)": "0.001169",
        "GCcontent (%)": "51.3",
        "Number of CDSs": "3752",
        "Average Protein Length": "301.3",
        "Coding Ratio (%)": "82.6",
        "Number of rRNAs": "6",
        "Number of tRNAs": "50",
        "Number of CRISPRs": "5"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Desulfonatronospira thiodismutans",
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                "accession": "GCA_000174435.1",
                "taxid": 488939,
                "species_taxid": 488939,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1367,
                "total_fragments": 1367,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Desulfonatronovibrio hydrogenovorans",
                "strain": "strain=DSM 9292",
                "accession": "GCA_000686525.1",
                "taxid": 53245,
                "species_taxid": 53245,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0319,
                "matched_fragments": 138,
                "total_fragments": 1367,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Solidesulfovibrio magneticus",
                "strain": "strain=RS-1",
                "accession": "GCA_000010665.1",
                "taxid": 184917,
                "species_taxid": 184917,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9147,
                "matched_fragments": 54,
                "total_fragments": 1367,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Desulfovibrio sulfodismutans",
                "strain": "strain=DSM 3696",
                "accession": "GCA_013376455.1",
                "taxid": 63561,
                "species_taxid": 63561,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6545,
                "matched_fragments": 68,
                "total_fragments": 1367,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Desulfovibrio sulfodismutans",
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                "accession": "GCA_010499425.1",
                "taxid": 63561,
                "species_taxid": 63561,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3452,
                "matched_fragments": 64,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Desulfomicrobium escambiense",
                "strain": "strain=DSM 10707",
                "accession": "GCA_000428825.1",
                "taxid": 29503,
                "species_taxid": 29503,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2524,
                "matched_fragments": 61,
                "total_fragments": 1367,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudodesulfovibrio hydrargyri",
                "strain": "strain=BerOc1",
                "accession": "GCA_001874525.1",
                "taxid": 2125990,
                "species_taxid": 2125990,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1599,
                "matched_fragments": 59,
                "total_fragments": 1367,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 1.39,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000174435.1",
                "gtdb_species": "s__Desulfonatronospira thiodismutans",
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                "matched_fragments": 1367,
                "total_fragments": 1367,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfonatronovibrionaceae;g__Desulfonatronospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.95",
                "min_intra_species_ani": "98.95",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCA_003554505.1",
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                "matched_fragments": 331,
                "total_fragments": 1367,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfonatronovibrionaceae;g__Desulfonatronospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.55",
                "min_intra_species_ani": "98.34",
                "mean_intra_species_af": "0.64",
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                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_003553695.1",
                "gtdb_species": "s__Desulfonatronospira sp003553695",
                "ani": 87.1412,
                "matched_fragments": 512,
                "total_fragments": 1367,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfonatronovibrionaceae;g__Desulfonatronospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.25",
                "min_intra_species_ani": "99.02",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_003563255.1",
                "gtdb_species": "s__Desulfonatronospira sp003563255",
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                "matched_fragments": 551,
                "total_fragments": 1367,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfonatronovibrionaceae;g__Desulfonatronospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.64",
                "min_intra_species_ani": "98.64",
                "mean_intra_species_af": "0.80",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_003551155.1",
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                "matched_fragments": 213,
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                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfonatronovibrionaceae;g__Desulfonatronospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003566455.1",
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                "matched_fragments": 113,
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                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfonatronovibrionaceae;g__Desulfonatronovibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_007125075.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfonatronovibrionaceae;g__Desulfonatronospira",
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                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_007127015.1",
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                "matched_fragments": 92,
                "total_fragments": 1367,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfonatronovibrionaceae;g__Desulfonatronospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_000428825.1",
                "gtdb_species": "s__Desulfomicrobium escambiense",
                "ani": 76.2571,
                "matched_fragments": 61,
                "total_fragments": 1367,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfomicrobiaceae;g__Desulfomicrobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": 30.0,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": 3971306.0,
        "gc_content": 51.3,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": 1.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
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        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Desulfonatronospira",
        "thiodismutans",
        "ASO3-1"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}