<?xml version="1.0" ?>
<BioSampleSet><BioSample submission_date="2009-02-24T11:35:09.460" last_update="2019-06-20T16:11:29.587" publication_date="2009-02-24T00:00:00.000" access="public" id="1917" accession="SAMN00001917">   <Ids>     <Id db="BioSample" is_primary="1">SAMN00001917</Id>     <Id db="JCVI" db_label="Sample name">HMP016-454 Sample</Id>     <Id db="SRA">SRS002089</Id>   </Ids>   <Description>     <Title>MIGS Cultured Bacterial/Archaeal sample from Capnocytophaga gingivalis ATCC 33624</Title>     <Organism taxonomy_id="553178" taxonomy_name="Capnocytophaga gingivalis ATCC 33624"/>     <Comment>       <Paragraph>Capnocytophaga gingivalis is a gram-negative, microaerophilic, CO2 requiring gliding bacterium. It is an opportunistic pathogen associated with periodontitis. The bacterium forms coaggregates with A. israelii that are involved in plaque formation on the surface of teeth. The coaggregates are formed by aminogalactoside- or neuraminlactose-sensitive molecules. </Paragraph>       <Paragraph>Keywords: GSC:MIxS;MIGS:6.0</Paragraph>     </Comment>   </Description>   <Owner>     <Name abbreviation="JCVI">J. Craig Venter Institute</Name>   </Owner>   <Models>     <Model>MIGS.ba</Model>   </Models>   <Package display_name="MIGS: cultured bacteria/archaea; version 6.0">MIGS.ba.6.0</Package>   <Attributes>     <Attribute attribute_name="finishing strategy (depth of coverage)">Level 2: High-Quality Draft37x;37</Attribute>     <Attribute attribute_name="collection date" harmonized_name="collection_date" display_name="collection date">not determined</Attribute>     <Attribute attribute_name="estimated_size" harmonized_name="estimated_size" display_name="estimated size">2667000</Attribute>     <Attribute attribute_name="isol_growth_condt" harmonized_name="isol_growth_condt" display_name="isolation and growth condition">not determined</Attribute>     <Attribute attribute_name="specific host" harmonized_name="host" display_name="host">Homo sapiens</Attribute>     <Attribute attribute_name="project_type">Reference Genome</Attribute>     <Attribute attribute_name="lat_lon" harmonized_name="lat_lon" display_name="latitude and longitude">not determined</Attribute>     <Attribute attribute_name="biome" harmonized_name="env_broad_scale" display_name="broad-scale environmental context">terrestrial biome [ENVO:00000446]</Attribute>     <Attribute attribute_name="misc_param: HMP body site">not determined</Attribute>     <Attribute attribute_name="nucleic acid extraction">not determined</Attribute>     <Attribute attribute_name="investigation type" harmonized_name="investigation_type" display_name="investigation type">missing</Attribute>     <Attribute attribute_name="feature" harmonized_name="env_local_scale" display_name="local-scale environmental context">human-associated habitat [ENVO:00009003]</Attribute>     <Attribute attribute_name="host taxid" harmonized_name="host_taxid" display_name="host taxonomy ID">9606</Attribute>     <Attribute attribute_name="project_name" harmonized_name="project_name" display_name="project name">Capnocytophaga gingivalis ATCC 33624</Attribute>     <Attribute attribute_name="assembly">not determined</Attribute>     <Attribute attribute_name="geo_loc_name" harmonized_name="geo_loc_name" display_name="geographic location">not determined</Attribute>     <Attribute attribute_name="source_mat_id" harmonized_name="source_material_id" display_name="source material identifiers">ATCC 33624</Attribute>     <Attribute attribute_name="material" harmonized_name="env_medium" display_name="environmental medium">biological product [ENVO:02000043]</Attribute>     <Attribute attribute_name="ref_biomaterial" harmonized_name="ref_biomaterial" display_name="reference for biomaterial">not determined</Attribute>     <Attribute attribute_name="misc_param: HMP supersite">oral</Attribute>     <Attribute attribute_name="num_replicons" harmonized_name="num_replicons" display_name="number of replicons">not determined</Attribute>     <Attribute attribute_name="sequencing method">454</Attribute>     <Attribute attribute_name="sop">http://hmpdacc.org/doc/CommonGeneAnnotation_SOP.pdf</Attribute>     <Attribute attribute_name="strain" harmonized_name="strain" display_name="strain">ATCC 33624</Attribute>     <Attribute attribute_name="environmental package" harmonized_name="env_package" display_name="environmental package">missing</Attribute>     <Attribute attribute_name="culture-collection" harmonized_name="culture_collection" display_name="culture collection">ATCC:33624</Attribute>     <Attribute attribute_name="isolation-source" harmonized_name="isolation_source" display_name="isolation source">missing</Attribute>     <Attribute attribute_name="type-material">type strain of Capnocytophaga gingivalis</Attribute>   </Attributes>   <Links>     <Link type="entrez" target="bioproject">31387</Link>   </Links>   <Status status="live" when="2013-08-28T13:57:58"/> </BioSample> </BioSampleSet>
