{ "type": "genome", "identifier": "GCF_000175215.2", "organism": "Asticcacaulis excentricus CB 48", "title": "Asticcacaulis excentricus CB 48", "description": "na", "data type": "Genome sequencing and assembly", "organization": "US DOE Joint Genome Institute (JGI-PGF)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000175215.2", "bioproject": "PRJNA224116", "biosample": "SAMN00002561", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "573065", "species_taxid": "78587", "organism_name": "Asticcacaulis excentricus CB 48", "infraspecific_name": "strain=CS 48", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2010/12/22", "asm_name": "ASM17521v2", "asm_submitter": "US DOE Joint Genome Institute (JGI-PGF)", "gbrs_paired_asm": "GCA_000175215.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/175/215/GCF_000175215.2_ASM17521v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4308776", "genome_size_ungapped": "4308776", "gc_percent": "59.500000", "replicon_count": "4", "scaffold_count": "4", "contig_count": "4", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000175215.2-RS_2024_05_01", "annotation_date": "2024-05-01", "total_gene_count": "3860", "protein_coding_gene_count": "3772", "non_coding_gene_count": "62", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2010-12-22", "dateModified": "2010-12-22", "datePublished": "2010-12-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Asticcacaulis excentricus CB 48" ], "sample_taxid": [ "573065" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [ "None" ], "sample_host_disease_id": [], "sample_host_location": [ "Missing" ], "sample_host_location_id": [], "data_size": "1.216 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4308776", "Number of Sequences": "4", "Longest Sequences (bp)": "2588221", "N50 (bp)": "2588221", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.5", "Number of CDSs": "3930", "Average Protein Length": "322.7", "Coding Ratio (%)": "88.3", "Number of rRNAs": "9", "Number of tRNAs": "50", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Asticcacaulis excentricus", "strain": "strain=CB 48", "accession": "GCA_000175215.2", "taxid": 78587, "species_taxid": 78587, 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"below_threshold" }, { "organism_name": "Brevundimonas guildfordensis", "strain": "strain=Sa3CVA3", "accession": "GCA_014836405.1", "taxid": 2762241, "species_taxid": 2762241, "relation_to_type": "type", "validated": true, "ani": 77.0981, "matched_fragments": 162, "total_fragments": 1434, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caulobacter zeae", "strain": "strain=410", "accession": "GCA_002858925.1", "taxid": 2055137, "species_taxid": 2055137, "relation_to_type": "type", "validated": true, "ani": 76.9958, "matched_fragments": 191, "total_fragments": 1434, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caulobacter rhizosphaerae", "strain": "strain=CGMCC 1.15915", "accession": "GCA_014645055.1", "taxid": 2010972, "species_taxid": 2010972, "relation_to_type": "type", "validated": true, "ani": 76.9595, "matched_fragments": 185, "total_fragments": 1434, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella 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